View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507_low_24 (Length: 407)

Name: NF1507_low_24
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507_low_24
NF1507_low_24
[»] chr2 (3 HSPs)
chr2 (1-392)||(37844743-37845137)
chr2 (250-291)||(33197360-33197401)
chr2 (245-297)||(28803621-28803673)
[»] chr7 (2 HSPs)
chr7 (245-303)||(1431417-1431475)
chr7 (247-291)||(27481415-27481459)
[»] chr8 (4 HSPs)
chr8 (294-328)||(10923604-10923638)
chr8 (245-277)||(6950239-6950271)
chr8 (294-334)||(26473780-26473820)
chr8 (251-291)||(31875680-31875720)
[»] chr5 (2 HSPs)
chr5 (245-291)||(20982256-20982302)
chr5 (245-297)||(6739775-6739827)
[»] chr4 (2 HSPs)
chr4 (243-297)||(24936212-24936265)
chr4 (250-298)||(24193493-24193541)
[»] chr3 (1 HSPs)
chr3 (249-291)||(29094288-29094330)
[»] chr1 (2 HSPs)
chr1 (245-290)||(24263261-24263306)
chr1 (294-335)||(25479582-25479623)


Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 37845137 - 37844743
Alignment:
Q  1 cacaactcttccttggtcattgtactgagatccatggcaggggcagatgaacttcttctcagcttgattaaatggcacgacacacccgaggtgagtgcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37845137 cacaactcttccttggtcattgtactgagatccatggcaggggcagatgaacttcttctcagcttgattaaatggcacgacacacccgaggtgagtgcat 37845038  T
Q  101 acggcattaattgcaaatgttgcaagtgttctgtcactctctaccacaagataggtaggatcaccctgttattgaatttatcaaagtagttattatggtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37845037 acggcattaattgcaaatgttgcaagtgttctgtcactctctaccacaagataggtaggatcaccctgttattgaatttatcaaagtagttattatggtg 37844938  T
Q  201 gaagcttgagaaggaatttatttcactcttccaaacagtatctgaagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattttca 300  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844937 gaagcttgagaaggaatttatttcactctttcaaacagtatcttaagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattttca 37844838  T
Q  301 taagctctctagaatagctaatgaaaacgactt---atggagacacactaaccagtttgcaattgaacacttacctttaatccttgtgtaagagt 392  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844837 taagctctctagaatagctaatgaaaacgacttataatggagacacactaaccagtttgcaattgaacacttacctttaatccttgtgtaagagt 37844743  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 33197401 - 33197360
Alignment:
Q  250 cttatagcataaaagcttatcatataagtgtttatctataag 291  Q
    |||||| |||||| |||||||||||||||| |||||||||||    
T  33197401 cttataacataaacgcttatcatataagtgcttatctataag 33197360  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 28803673 - 28803621
Alignment:
Q  245 aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt 297  Q
    ||||| |||| ||||||| |||||||||||||||| |||| ||||||| ||||    
T  28803673 aagtgtttatggcataaatgcttatcatataagtgcttatatataagttattt 28803621  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 1431475 - 1431417
Alignment:
Q  245 aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattttcataa 303  Q
    |||| ||||||||||||  ||||||||||||||||||||| ||||||| |||| |||||    
T  1431475 aagttcttatagcataagtgcttatcatataagtgtttatgtataagttatttccataa 1431417  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 27481459 - 27481415
Alignment:
Q  247 gtgcttatagcataaaagcttatcatataagtgtttatctataag 291  Q
    |||||||||||||||| | |||| |||||||||||||| ||||||    
T  27481459 gtgcttatagcataaatgtttattatataagtgtttatgtataag 27481415  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 328
Target Start/End: Complemental strand, 10923638 - 10923604
Alignment:
Q  294 attttcataagctctctagaatagctaatgaaaac 328  Q
    |||||||||||||||| ||||||||||||||||||    
T  10923638 attttcataagctctccagaatagctaatgaaaac 10923604  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 6950239 - 6950271
Alignment:
Q  245 aagtgcttatagcataaaagcttatcatataag 277  Q
    |||||||||||||||||| ||||||||||||||    
T  6950239 aagtgcttatagcataaacgcttatcatataag 6950271  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 26473780 - 26473820
Alignment:
Q  294 attttcataagctctctagaatagctaatgaaaacgactta 334  Q
    ||||||||||||||||||| |||||| |||||||| |||||    
T  26473780 attttcataagctctctaggatagcttatgaaaacaactta 26473820  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 31875720 - 31875680
Alignment:
Q  251 ttatagcataaaagcttatcatataagtgtttatctataag 291  Q
    |||||||||||  |||||||||||||||| |||||||||||    
T  31875720 ttatagcataagcgcttatcatataagtgcttatctataag 31875680  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 20982302 - 20982256
Alignment:
Q  245 aagtgcttatagcataaaagcttatcatataagtgtttatctataag 291  Q
    |||||||||||||||||  |||||||||||||||| |||| ||||||    
T  20982302 aagtgcttatagcataagtgcttatcatataagtgcttatgtataag 20982256  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 6739775 - 6739827
Alignment:
Q  245 aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt 297  Q
    ||||||||||| |||||  | |||||||||||| |||||| ||||||||||||    
T  6739775 aagtgcttatatcataagcgtttatcatataagcgtttatgtataagtcattt 6739827  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 24936212 - 24936265
Alignment:
Q  243 tgaagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt 297  Q
    |||||||||||||||||||| |||||| ||||||||| |||| ||||||| ||||    
T  24936212 tgaagtgcttatagcataaaggcttat-atataagtggttatgtataagttattt 24936265  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 24193493 - 24193541
Alignment:
Q  250 cttatagcataaaagcttatcatataagtgtttatctataagtcatttt 298  Q
    ||||||||||||| |||||||||||||||  |||| ||||||| |||||    
T  24193493 cttatagcataaacgcttatcatataagtacttatgtataagttatttt 24193541  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 29094288 - 29094330
Alignment:
Q  249 gcttatagcataaaagcttatcatataagtgtttatctataag 291  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  29094288 gcttatagcataaacacttatcatataagtgtttatgtataag 29094330  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 24263306 - 24263261
Alignment:
Q  245 aagtgcttatagcataaaagcttatcatataagtgtttatctataa 290  Q
    |||||||||||||||||| | ||| ||||||||||||||| |||||    
T  24263306 aagtgcttatagcataaacgtttagcatataagtgtttatgtataa 24263261  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 25479623 - 25479582
Alignment:
Q  294 attttcataagctctctagaatagctaatgaaaacgacttat 335  Q
    ||||||||||||||||||| |||||| |||||||| ||||||    
T  25479623 attttcataagctctctaggatagcttatgaaaacaacttat 25479582  T

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