View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_26 (Length: 387)
Name: NF1507_low_26
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 42215333 - 42214995
Alignment:
| Q |
12 |
caaagaagagagtcaagcttctcaagttgccaataacagaaggaatctcaccagtaatagcattgttgtcaacttccagctgaatcaaagaactgcagtt |
111 |
Q |
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| T |
42215333 |
caaagaagagagtcaagtttctcaagttgccaataacagaaggaatctcaccagtaatagcattgttgtcaacttccagctgaatcaaagaactgcagtt |
42215234 |
T |
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| Q |
112 |
tgaaatttcaggtggtataatacctgacaactgattaacactcagttgaagtccttgcagatttgatagctttccaaaactgattggtatgctacctgtg |
211 |
Q |
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| T |
42215233 |
tgaaatttcaggtggtataatacctgacaactgattaacactcagttgaagtccttgcagatttgatagctttccaaaactgattggtatgctacctgtg |
42215134 |
T |
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| Q |
212 |
agaagattttctgacaaatctatctcactgagctctctgcagtttccaagctcttctggaattgctcctaccatattgttttgccataaaagtagactct |
311 |
Q |
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| T |
42215133 |
agaagattttctgacaaatctatctcactgagctctctgcagtttccaagctcttctggaattgctcctaccatattgttttgccataaaagtagactct |
42215034 |
T |
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| Q |
312 |
gaagctttctgagctcaccaatttgaggtggaagtgaac |
350 |
Q |
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| T |
42215033 |
gaagctttctgagctcaccaatttgaggtggaattgaac |
42214995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 311
Target Start/End: Complemental strand, 24156742 - 24156455
Alignment:
| Q |
24 |
tcaagcttctcaagttgccaataacagaaggaatctcaccagtaatagcattgttgtcaacttccagctgaatcaaagaactgcagtttgaaatttcagg |
123 |
Q |
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| T |
24156742 |
tcaagtttctcaaattgccaataagaggaggaatctcaccagtgagagcattgttgtcaatttcaagttgagtcaaagaagtgcaatgtgaaatctcagg |
24156643 |
T |
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| Q |
124 |
tggtataatacctgacaactgattaacactcagttgaagtccttgcagatttgatagctttccaaaactgattggtatgctacctgtgagaagattttct |
223 |
Q |
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||||| |||||||| | ||||| ||||||| |||||| |||| |||||||| |||| || | | | | |||||||||||||| | |||||||||| |
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| T |
24156642 |
aggtatgatacctgagagatgattgacactcaattgaagctcttgaagatttgaaagctcgccgagaatcttcggtatgctacctgttaaaagattttct |
24156543 |
T |
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| Q |
224 |
gacaaatctatctcactgagctctctgcagtttccaagctcttctggaattgctcctaccatattgttttgccataaaagtagactct |
311 |
Q |
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| T |
24156542 |
gaaaaatctataagttgaatctctctgcatcttccaatctcttctggaatagtacctactaaattgttctgccatagaagtaaactct |
24156455 |
T |
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