View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_30 (Length: 330)
Name: NF1507_low_30
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 89 - 309
Target Start/End: Complemental strand, 16903415 - 16903195
Alignment:
| Q |
89 |
cccatggattcgaaagtctgttactccatgctcataatttggtttgcatttgtctgtttttctagttgatgaagtacaaaaagtactcggccattgctgt |
188 |
Q |
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| T |
16903415 |
cccatggattcgaaagtttgttactccatgctcataatttggtttgcatttgtctgtttttctagttgacgaagtacaaaaagtactcggccattgttgt |
16903316 |
T |
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| Q |
189 |
gcaaacattaaaaaatcgtatgcagaaaatgctattgagggagacaataacaaaaccattaagaaaatgatgagaaattccattactaagttttagttta |
288 |
Q |
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| T |
16903315 |
gcaaacattaaaaaatcgtatgcacaaaatgctatcgagggagacaataacaaaaccactaagaaaatgatgagaaattccattactaagttttagttta |
16903216 |
T |
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| Q |
289 |
aaatgatgagaaaaccaatgg |
309 |
Q |
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| T |
16903215 |
aaatgatgagaaaaccaatgg |
16903195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 16992478 - 16992441
Alignment:
| Q |
50 |
atttattggttgtgccccagtgtgattatggggccaca |
87 |
Q |
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| T |
16992478 |
atttattggttgtgccccagtgtgattatggggccaca |
16992441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 16903984 - 16903952
Alignment:
| Q |
50 |
atttattggttgtgccccagtgtgattatgggg |
82 |
Q |
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| T |
16903984 |
atttattggttgtgccccagtgtgattatgggg |
16903952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 255
Target Start/End: Original strand, 10447443 - 10447642
Alignment:
| Q |
56 |
tggttgtgccccagtgtgattatggggccacaacccatggattcgaaa-gtctgttactccatgctcataatttggtttgcatttgtctgtttttctagt |
154 |
Q |
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| T |
10447443 |
tggttgtggcctagtatgattctggggccacaacctgtgaatccgaaaagtccattactccatgctaataagctagtttgcatgggtatgtttttctact |
10447542 |
T |
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| Q |
155 |
tgatgaagtacaaaaagtactcggccattgctgtgcaaacattaaaaaatcgtatgcagaaaatgctattgagggagacaataacaaaaccattaagaaa |
254 |
Q |
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| T |
10447543 |
tggcgaagcacaaaa-gtatttggcctttgttgtgcaaacattaagtaatcatatgcacaaaaggttgttgagtgaaacaataagaaaaccaccaagaaa |
10447641 |
T |
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