View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_31 (Length: 324)
Name: NF1507_low_31
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 41118917 - 41118605
Alignment:
| Q |
11 |
aatgagagcagtaagcatgaagtaatacagataaccaaatactgcattcataatg-----------------aagaaacagttaaagaaagaaaaactgt |
93 |
Q |
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| T |
41118917 |
aatgagagcagtaagcatgaagtaatacagataaccaaatactgcattcataatggccctacaaacctaatgaagaaacagtttaagaaagaaaaactgt |
41118818 |
T |
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| Q |
94 |
tacctctttgaatctgataatattaggatgccttaatgatctgtggttaattatgtccctctggacactctcatcaatctggtatcagaaataatttgat |
193 |
Q |
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| T |
41118817 |
tacctctttgaatctgataatattaggatgccttaatgatctgtggttaattatgtccctctggacactctcatcaatctggtatcagaaataatttgat |
41118718 |
T |
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| Q |
194 |
tgaaacttcttgaacagaatatccttgatgaagagtttaagctaattaattaagctttgttaatacagtaacagtacacttctgcatagtgttgctgact |
293 |
Q |
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| T |
41118717 |
tgaaacttcttgaacagaatatccttaatgaagagtttaagctaattaattaagctttgttaatacagtaacagtacacttctccagagtgttgctgact |
41118618 |
T |
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| Q |
294 |
gctgagggtgatt |
306 |
Q |
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| T |
41118617 |
gctgagggtgatt |
41118605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 41125042 - 41124922
Alignment:
| Q |
61 |
taatgaagaaacagttaaagaaag-aaaaactgttacctctttgaatctgataatattaggatgccttaatgatctgtggttaattatgtccctctggac |
159 |
Q |
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| T |
41125042 |
taatgaagaaacagtttaaggaaggaaaaactgttacctctttgaatctgataatattaggatgccttaacgatcggtggttaattatctccctttgaac |
41124943 |
T |
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| Q |
160 |
actctcatcaatctggtatca |
180 |
Q |
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| T |
41124942 |
attctcatcaatctggcatca |
41124922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 52248761 - 52248720
Alignment:
| Q |
86 |
aaaactgttacctctttgaatctgataatattaggatgcctt |
127 |
Q |
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| T |
52248761 |
aaaactcttacctctttgaatctgtaaatattaggatgcctt |
52248720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 4321358 - 4321439
Alignment:
| Q |
93 |
ttacctctttgaatctgataatattaggatgccttaatgatctgtggttaattatgtccctctggacactctcatcaatctg |
174 |
Q |
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| T |
4321358 |
ttacctctttgaacttgataatatttggatgccttaaagatcgatggttaactatctcccttggaacattctcatcaatctg |
4321439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 27107715 - 27107794
Alignment:
| Q |
95 |
acctctttgaatctgataatattaggatgccttaatgatctgtggttaattatgtccctctggacactctcatcaatctg |
174 |
Q |
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||||||||||| || | ||||||||||||| | |||||||| ||||| || || ||||| |||||| | ||||||||||| |
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| T |
27107715 |
acctctttgaacctaacaatattaggatgcttcaatgatctatggttcatgatttccctttggacattatcatcaatctg |
27107794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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