View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_35 (Length: 310)
Name: NF1507_low_35
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 34617259 - 34616981
Alignment:
| Q |
18 |
taattatgaatcaaatgagtttactttgctttgtcaaacataaacaaactacatgttgaagaagctagaatgactaacatacacaatgataatcaagcca |
117 |
Q |
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| T |
34617259 |
taattatgaatcaaatgagtttactttgctttgtcaaacataaacaaactacatgttgaagaagctagaatgactaacatacacaatgataatcaagcca |
34617160 |
T |
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| Q |
118 |
gtccgatatgttgtcgaataaatgttgtgaaccaaaccaacaatgatacaaacagaagacaaatacaaaaatactgcgaggaactgctacaatagcagtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34617159 |
gtccgatatgttgtcgaataaatgttgtgaaccaaaccaacaatgatacaaacagaagacaaatacaaaaatactgcgaggaactgctacaatagcagtt |
34617060 |
T |
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| Q |
218 |
tagtattcataaaagaatcaagtttacgatgtcccaactataagaaaaatcacatgaactaaggcaaactctcccctgat |
297 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34617059 |
tagtattcataaaagaatcaagtttacgatgt-ccaactataagaaaaatcacatgaactaaggcaaactctcccctgat |
34616981 |
T |
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