View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_39 (Length: 295)
Name: NF1507_low_39
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 44817400 - 44817132
Alignment:
| Q |
20 |
attgtggtgctgcagacaaataaactttcttctgtgaactaaacccatcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttcaatatc |
119 |
Q |
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| T |
44817400 |
attgtggtgctgcagacaaataaactttcttctgtgaactaaacccatcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttcaatatc |
44817301 |
T |
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| Q |
120 |
aaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagctgtgaggcgtcg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44817300 |
aaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagctgtgaggcgtcg |
44817201 |
T |
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| Q |
220 |
taagacgagtagagagagtagcttccagtgccacctccgatagagagcaacactttgatgcctttgctt |
288 |
Q |
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| T |
44817200 |
taagacgagtagagagagtagcttccagtgccacctccgatagagagcaacactttgatgcctttgctt |
44817132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 44834754 - 44834489
Alignment:
| Q |
20 |
attgtggtgctgcagacaaataaactttcttctgtgaactaaacccatcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttcaatatc |
119 |
Q |
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| T |
44834754 |
attgaggtgctgcagacaagtaaactctcctttgtgagctaaaaccattaagtgctcttgcaaggtcatc---atagtgttcaccaccagcttcaatatc |
44834658 |
T |
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| Q |
120 |
aaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagctgtgaggcgtcg |
219 |
Q |
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| T |
44834657 |
aaaatcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccataggtaatttgcaacctgcgtggcatca |
44834558 |
T |
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| Q |
220 |
taagacgagtagagagagtagcttccagtgccacctccgatagagagcaacactttgatgcctttgctt |
288 |
Q |
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| T |
44834557 |
tcagctgaggaaagagagtagcttccggcaccacctccgagagatagcaacactttgatgcctttgctt |
44834489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 44838142 - 44838060
Alignment:
| Q |
111 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccata |
193 |
Q |
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| T |
44838142 |
ttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccata |
44838060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 44849229 - 44849147
Alignment:
| Q |
111 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccata |
193 |
Q |
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|||||| |||||||| || ||||| || ||||||||||| |||||||||||| |||| ||||||||||||||| ||||||||| |
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| T |
44849229 |
ttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata |
44849147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 67 - 288
Target Start/End: Original strand, 17570951 - 17571172
Alignment:
| Q |
67 |
tcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatg |
166 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17570951 |
tcaagtgcttttgcaagttcatcccaatgttcaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatg |
17571050 |
T |
|
| Q |
167 |
atgtgccacccaagaaattgttccataggtagtttgcaagctgtgaggcgtcgtaagacgagtagagagagtagcttccagtgccacctccgatagagag |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| |||||||||||||||| ||| ||| ||||| |||| |
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| T |
17571051 |
atgtgccacccaagaaattgttccataggtagtttgcaagctgcgtggtgtcgtaagacgagttgagagagtagcttccaacgccgccttcgataaagag |
17571150 |
T |
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| Q |
267 |
caacactttgatgcctttgctt |
288 |
Q |
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|||||||||||||||||||||| |
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| T |
17571151 |
caacactttgatgcctttgctt |
17571172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 23396491 - 23396543
Alignment:
| Q |
71 |
gtgcttttgcaagttcatcccaatattgaccatcaccagcttcaatatcaaaa |
123 |
Q |
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| T |
23396491 |
gtgcttttgcaagttcatcccaatattgaccatcaccaacttcaatatcaaaa |
23396543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 48222505 - 48222595
Alignment:
| Q |
99 |
accatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttc |
189 |
Q |
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| T |
48222505 |
accaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttgattttgatgtccctcctaagaaattgttc |
48222595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 47980246 - 47980207
Alignment:
| Q |
110 |
cttcaatatcaaaatcaattccatccaaaacagcatcacc |
149 |
Q |
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| T |
47980246 |
cttcaatgtcaaaatcaatgccatccaaaacagcatcacc |
47980207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 43901341 - 43901261
Alignment:
| Q |
111 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttcca |
191 |
Q |
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|||||||||||||||||| ||||| || | |||||| || ||||| | ||||||||| | |||||||| || |||||||| |
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| T |
43901341 |
ttcaatatcaaaatcaataccatctaatatagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttcca |
43901261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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