View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_43 (Length: 279)
Name: NF1507_low_43
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 263
Target Start/End: Complemental strand, 10507610 - 10507382
Alignment:
| Q |
35 |
atgctaatagaaaatgaaataagagaaaaaatggctgatattacctatgaaatcaataatgattctaccatcagagtatcttccagttgatctatgaaaa |
134 |
Q |
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| T |
10507610 |
atgctaatagagaataaaataagagaaaaaatggccagtattacctatgaaatcaagaatgattcggccatcagaaaatcttccagttgatctatgaaaa |
10507511 |
T |
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| Q |
135 |
taagtctctccatatggagaaggtggtgcttgaaaggcagcagccaaaccaccagtgtcaacgtttgaagcaccaaagctaaatatggcaggaaaatcac |
234 |
Q |
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| T |
10507510 |
taagtctctccatatggagaaggtggtgctcgaaaggcagcagccaaaccaccagtgtcaacgtttgaagcaccaaagctaaatatggcaggaaaatcac |
10507411 |
T |
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| Q |
235 |
aattctttgtagcaaatattgggggtgta |
263 |
Q |
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| T |
10507410 |
aattctttgtagcaaatattgggggtgta |
10507382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 71 - 263
Target Start/End: Complemental strand, 10502300 - 10502108
Alignment:
| Q |
71 |
gatattacctatgaaatcaataatgattctaccatcagagtatcttccagttgatctatgaaaataagtctctccatatggagaaggtggtgcttgaaag |
170 |
Q |
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| T |
10502300 |
gatattacctatgaaatcaagaatgattcgaccatcagaaaatcttccagttgatctatgaaaataagtctctccatatggagaaggtggtgcttgaaag |
10502201 |
T |
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| Q |
171 |
gcagcagccaaaccaccagtgtcaacgtttgaagcaccaaagctaaatatggcaggaaaatcacaattctttgtagcaaatattgggggtgta |
263 |
Q |
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| T |
10502200 |
gcagcagccaaaccaccagtgtcaacgtttgaagcaccaaagctaaatatggcaggaaaatcacaattccttgtagcaaatattgggggtgta |
10502108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 72 - 264
Target Start/End: Complemental strand, 10496675 - 10496483
Alignment:
| Q |
72 |
atattacctatgaaatcaataatgattctaccatcagagtatcttccagttgatctatgaaaataagtctctccatatggagaaggtggtgcttgaaagg |
171 |
Q |
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||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||| |||||||||||| ||| | || |||||||||||| |
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| T |
10496675 |
atatttcctatgaaatcaagaatgattcgaccatcagaaaatcttccagttgatctattgaaaaaagtctctccatttggcaacggcagtgcttgaaagg |
10496576 |
T |
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| Q |
172 |
cagcagccaaaccaccagtgtcaacgtttgaagcaccaaagctaaatatggcaggaaaatcacaattctttgtagcaaatattgggggtgtag |
264 |
Q |
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| T |
10496575 |
cagcagctaaaccaccagtatcagagtttgaagcaccaaagttaaatatggcaggaaaatcacaattctttgtggcaaatatggggggtgtag |
10496483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 74 - 258
Target Start/End: Complemental strand, 10483728 - 10483544
Alignment:
| Q |
74 |
attacctatgaaatcaataatgattctaccatcagagtatcttccagttgatctatgaaaataagtctctccatatggagaaggtggtgcttgaaaggca |
173 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||| ||| | | |||||||||||||| |
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| T |
10483728 |
attacctatgaaatcaataatgattcgtccatcagaaaatcttccagttgatctattgaaaaaagtctctccatttggcaactgaagtgcttgaaaggca |
10483629 |
T |
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| Q |
174 |
gcagccaaaccaccagtgtcaacgtttgaagcaccaaagctaaatatggcaggaaaatcacaattctttgtagcaaatattgggg |
258 |
Q |
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| T |
10483628 |
gcagccaaaccaccagtatcagcgtttgaagcaccaaagttaaatatggcaggacaatcaaaaaaatttgtggcagatattgggg |
10483544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 10547399 - 10547548
Alignment:
| Q |
74 |
attacctatgaaatcaataatgattctaccatcagagtatcttccagttgatctatgaaaataagtctctccatatggagaaggtggtgcttgaaaggca |
173 |
Q |
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|||||| ||||||||||| || | ||| ||||||||| | |||||||| | ||||| ||||||||||| ||||| || | |||||| | ||||||| |
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| T |
10547399 |
attaccaatgaaatcaatgattaatctgccatcagaggaccttccagtaggtctattgaaataagtctccccataaggtgttggtggttgtacaaaggca |
10547498 |
T |
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| Q |
174 |
gcagccaaaccaccagtgtcaacgtttgaagcaccaaagctaaatatggc |
223 |
Q |
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| T |
10547499 |
gcagccatgccaccagtatcagagtttgaatcaccaaagttaaatatggc |
10547548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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