View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_5 (Length: 579)
Name: NF1507_low_5
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 8929921 - 8929344
Alignment:
| Q |
1 |
attaggtgtcttttgattcctcaaattagaaacttagaatttagaaagcaagtagcaatcaaatggatatctccttctttagaaagtaaactgatatgat |
100 |
Q |
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| T |
8929921 |
attaggtgtcttttgattcctcaaattagaaacttagaatttagaaagcaagtagcaatcaaatggatatctccttctttagaaagtaaactgatatgat |
8929822 |
T |
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| Q |
101 |
agattggagagacattgattattgccgagcatgaaattgaatttctannnnnnnaaagaaaaagacaagatactagcacttgatcaaaataatatgtaat |
200 |
Q |
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| T |
8929821 |
agattggagagacattgattattgccgagcatgaaattgaatttctatttttttaaagaaaaagacaagataccagcacttgatcaaaataatatgtaat |
8929722 |
T |
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| Q |
201 |
ggagagagaatagttgagatattgtgaataaataactaaacctttgatgaataattcaattcaaattaatatacaagtttgtggcgtatcttaatttaac |
300 |
Q |
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| T |
8929721 |
ggagagagaatagttgagatattgtgaataaataactaaacctttcatgaataattcaattcaaattaatatacaagtttgtggcgtatctt-atttaac |
8929623 |
T |
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| Q |
301 |
aataagtggtgttattgggtagaataatttttggtcaaactatactatagctatttcacagtcgaactcttgattatcagggctcattcctccaaaaatg |
400 |
Q |
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||| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||| |
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| T |
8929622 |
aattagtggtgttattaggtagaacaatttttggtcaaactatactatagttattttacggtcgaactcttgattatcagggctcattcctctgaaaatg |
8929523 |
T |
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| Q |
401 |
agagttaacaccnnnnnnncaaagttaacaatcaaagcagccaaagataaatatgctaaaactctcgttttaggcctacaagcnnnnnnncctcatgtgg |
500 |
Q |
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| T |
8929522 |
agagttaacaccaaaaaaacaaagttaacaatcaaggcagccaaagataaatatgctaaaactctcgctttaggcctacaagcaaaaaaacctcatgtgg |
8929423 |
T |
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| Q |
501 |
agacaaaaaggccacgcatattaaaacttgctttatacctcacttgcttctaaagattattagatcaaccctaataact |
579 |
Q |
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| T |
8929422 |
agacaaaaaggccacacatattaaaacttgctttatacctcacttgcttctaaagattattagatcaaccctaataact |
8929344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 542 - 578
Target Start/End: Complemental strand, 8929346 - 8929310
Alignment:
| Q |
542 |
acttgcttctaaagattattagatcaaccctaataac |
578 |
Q |
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| T |
8929346 |
acttgcttctaaagattattggatcaaccctaataac |
8929310 |
T |
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