View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_50 (Length: 262)
Name: NF1507_low_50
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 44721877 - 44722123
Alignment:
| Q |
1 |
gcgggttatgaaaaatttgaacgtaaactagctgttgtaagtatccacttgttttattgagagtacttgtcggaatagaaatcataaaaagctttcttta |
100 |
Q |
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| T |
44721877 |
gcgggttatgaaaaatttgaacgtaaactagctgttgtaagtatccacttgttttattgagagtacttgtcggaatagaaatcataaaaagctttcttta |
44721976 |
T |
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| Q |
101 |
aaggagaagaagtttttgaatgttcatatgattagtctgcaaatcaccaagtgattatgctctatggcattgcggtgctaggtcttaaatttctttttat |
200 |
Q |
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| T |
44721977 |
aaggggaagaagtttttgaatgttcatatgattagtctgcaaattaccaagtcattatgctctatggcattgcggtgcgaggtcttaaatttctttttat |
44722076 |
T |
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| Q |
201 |
gaatataaaccttgaaatttaggtttccaaatcaaataggtatatat |
247 |
Q |
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| T |
44722077 |
gtatataaaccttgaaatttaggtttccaaatcaaataggtatatat |
44722123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 43951944 - 43952034
Alignment:
| Q |
149 |
aagtgattatgctctatggcattgcggtgctaggtcttaaatttctttttatgaatataaaccttgaaatttaggtttccaaatcaaatag |
239 |
Q |
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| T |
43951944 |
aagtcattatggtctttggcattgtgatgctagaacttaaatttctttttatatatctgaaccttgaaatttaggtttccaaatcaaatag |
43952034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 43951808 - 43951897
Alignment:
| Q |
50 |
tgttttattgagagtacttgtcggaatagaaatcataaaaagctttctttaaaggagaagaagtttttgaatgttcatatgattagtctgcaa |
142 |
Q |
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| T |
43951808 |
tgttttattgagagcacttgttggaatagaaatcataaacagtttcctttcaagg---ggaagttttttaatgttcatataattagtatgcaa |
43951897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 43951731 - 43951777
Alignment:
| Q |
11 |
aaaaatttgaacgtaaactagctgttgtaagtatccacttgttttat |
57 |
Q |
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| T |
43951731 |
aaaaaattgaacgtaaaccagctgttgtaagtatctacttgttttat |
43951777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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