View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_51 (Length: 257)
Name: NF1507_low_51
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 1249158 - 1249383
Alignment:
| Q |
18 |
ctaagcttgtaggcctagatgtaagccacaaccagctttgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgtggtttgagaa |
117 |
Q |
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| T |
1249158 |
ctaagcttgtaggcctagatgtgagccacaaccagctttgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgtggtttgagaa |
1249257 |
T |
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| Q |
118 |
taataagtgtttatgtggtgctcccttggccccttgcaaggcctagttaactaaagggatgcatgcttaataaatggacttcatgtattattgtgctctt |
217 |
Q |
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| T |
1249258 |
taataagtgtttatgtggtgctcccttggccccttgcaagacctagttaactaaagggatgcatgcttaataaatggacttcatgtattattgtgctctt |
1249357 |
T |
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| Q |
218 |
gtttatgcatggagttaagagaaatg |
243 |
Q |
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| T |
1249358 |
gtttatgcatggagttaagagaaatg |
1249383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 153
Target Start/End: Complemental strand, 12079078 - 12078961
Alignment:
| Q |
36 |
atgtaagccacaaccagctttgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtgg |
135 |
Q |
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| T |
12079078 |
atgtgagcaacaaccaactttgtggtcctataccgacagtcggagggaagttgcaagggtttgatccatcgtcgttttcgcataataagtgtttgtgtgg |
12078979 |
T |
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| Q |
136 |
tgctcccttggccccttg |
153 |
Q |
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| T |
12078978 |
ttctcctttgcccccttg |
12078961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 12095718 - 12095613
Alignment:
| Q |
36 |
atgtaagccacaaccagctttgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtgg |
135 |
Q |
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| T |
12095718 |
atgtgagctacaaccagcttttcggtcctataccgacagttggagggaagttgcaagagtttgatccatcgtcgttttcgcataataagggcttgtgtgg |
12095619 |
T |
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| Q |
136 |
tgctcc |
141 |
Q |
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| T |
12095618 |
ttctcc |
12095613 |
T |
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