View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_55 (Length: 250)
Name: NF1507_low_55
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34297569 - 34297804
Alignment:
| Q |
1 |
tgtatacaaatcaaattcttataatatataccctgtnnnnnnnttaaatctatataacatgtgtacagaaaatcatttaaagaaaattaaatttttgtaa |
100 |
Q |
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| T |
34297569 |
tgtatacaaatcaaattcttataatatataccctgtaaaaaaattaaatctatataacatgt--acagcaaatcatttaaaaaaaattaaatttt-gtat |
34297665 |
T |
|
| Q |
101 |
tacttacattcatatatcttttctcaataatttcaattgtgagatgctctagattagggcagctgtttagcatgaatgtgattccttcaaactcaaactg |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
34297666 |
tacttacattcatatatcttttctcaacaatttcaattgtgagatgctcaagattggggcagctgtttagcatgaatgtgattccctaaaactcaaactg |
34297765 |
T |
|
| Q |
201 |
gtgcaaagaggtcttcattatcaaatgtttcaccttcat |
239 |
Q |
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| T |
34297766 |
gtgcaaagaggtcttcattatcatatgtttcaccttcat |
34297804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34288265 - 34288501
Alignment:
| Q |
1 |
tgtatacaaatcaaattcttataatatataccctgtnnnnnnnttaaatctatataacatgtgtacagaaaatcatttaaagaaaattaaatttttgtaa |
100 |
Q |
| |
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||||||||||| ||||||||||||||||| |||| | ||||||||||||||||| | ||| |||||||| ||| ||||||||||||||||| |
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| T |
34288265 |
tgtatacaaattaaattcttataatatatgccctcttaaaaaattaaatctatataacatat--acaccaaatcattcaaatcaaattaaatttttgtaa |
34288362 |
T |
|
| Q |
101 |
tacttacattcatatatcttttctcaataatttcaattgtgagatgctctagattagggcagctgtttagcatgaatgtgattccttcaaactcaaactg |
200 |
Q |
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| T |
34288363 |
tacttacattcatatattttttctcaacaatttcaattgtgagatgctctaggttagggcagctctttagcatgaatgcgattccctcaaactcaagcgg |
34288462 |
T |
|
| Q |
201 |
gtgcaaagaggtcttcattatcaaatgtttcaccttcat |
239 |
Q |
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| T |
34288463 |
gtgcaaaaaggtcttcattatcaaatgtttcaccttcat |
34288501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 238
Target Start/End: Original strand, 34281922 - 34282089
Alignment:
| Q |
70 |
aaatcatttaaagaaaattaaatttttgtaatacttacattcatatatcttttctcaataatttcaattgtgagatgctctagattagggcagctgttta |
169 |
Q |
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|||||||||||| ||||||||| ||||||||||||||| ||||||||| ||| |||| ||||||||||| ||||| ||||| |||||||| || ||| |
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| T |
34281922 |
aaatcatttaaa-aaaattaaaattttgtaatacttaccttcatatatttttcttcaacaatttcaattgcgagatactctaagttagggcaactcgtta |
34282020 |
T |
|
| Q |
170 |
gcatgaatgtgattccttcaaactcaaactggtgcaaagaggtcttcattatcaaatgtttcaccttca |
238 |
Q |
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| T |
34282021 |
gcataaatgtgatttcctcaaacttaaactaatgtaaagaggtcttcattatcaaatgtttcaccttca |
34282089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 28248981 - 28249124
Alignment:
| Q |
84 |
aaattaaatttttgtaatacttacattcatatatcttttctcaataatttcaattgtgagatgctctagattagggcagctgtttagcatgaatgtgatt |
183 |
Q |
| |
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|||| |||||| ||||||||||||| ||| ||||| |||| |||||||||||||||| |||||| | ||||||||| ||||||| || | | | |
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| T |
28248981 |
aaatcaaatttatgtaatacttacaaacatgcgtctttcgtcaacaatttcaattgtgagacgctctaagtaagggcagcttcttagcataaaagatact |
28249080 |
T |
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| Q |
184 |
ccttcaaactcaaactggtgcaaagaggtcttcattatcaaatg |
227 |
Q |
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| T |
28249081 |
cccacaaactcaaaatggtgcaaagcggtcttcattatcaaatg |
28249124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 10330846 - 10330966
Alignment:
| Q |
119 |
ttttctcaataatttcaattgtgagatgctctagattagggcagctgtttagcatgaatgtgattccttcaaactcaaactggtgcaaagaggtcttcat |
218 |
Q |
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|||| |||| |||||||||||||||| | |||| | ||||| || ||||||||||||| |||||| ||||||||| | |||||||| |||||||| |
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| T |
10330846 |
ttttatcaacaatttcaattgtgagacgttctaagtcggggcaactctttagcatgaatgagattcccataaactcaaatttgtgcaaagcagtcttcat |
10330945 |
T |
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| Q |
219 |
tatcaaatgtttcaccttcat |
239 |
Q |
| |
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||||||||| |||||| |||| |
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| T |
10330946 |
tatcaaatgcttcaccctcat |
10330966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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