View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1507_low_60 (Length: 248)
Name: NF1507_low_60
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_60 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43942702 - 43942942
Alignment:
| Q |
1 |
ctattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatattttttactatcatgtcat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
43942702 |
ctattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcat |
43942801 |
T |
|
| Q |
101 |
tgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43942802 |
tgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaata |
43942901 |
T |
|
| Q |
201 |
ttctattactgttttttccactcattttaactcttcatctc |
241 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
43942902 |
ttgtattactgttttttccactcattttaactcttcatctc |
43942942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 22073958 - 22074033
Alignment:
| Q |
124 |
atgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaat |
199 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||| |
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|
| T |
22073958 |
atgtaattttgcgcaccaaattttgggttttgttcatcaccactttcaaacaacaattgtataattcatcttcaat |
22074033 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 2501135 - 2501056
Alignment:
| Q |
11 |
caataacaccaaacca--tctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatatttttta |
88 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||| |||| ||||||| |
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|
| T |
2501135 |
caataacaccgaaccacatctttctacatttttcctcaaccatgctatccaaatgttctaatcttatttcatgtttttta |
2501056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5885235 - 5884995
Alignment:
| Q |
1 |
ctattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatattttttactatcatgtcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5885235 |
ctattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcat |
5885136 |
T |
|
| Q |
101 |
tgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5885135 |
tgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaata |
5885036 |
T |
|
| Q |
201 |
ttctattactgttttttccactcattttaactcttcatctc |
241 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885035 |
ttgtattactgttttttccactcattttaactcttcatctc |
5884995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 54946252 - 54946124
Alignment:
| Q |
1 |
ctattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatattttttactatcatgtcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||| |
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|
| T |
54946252 |
ctattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttataatcttatatcatgttttttactatcgtgtcat |
54946153 |
T |
|
| Q |
101 |
tgagaaacattgtgtgtataaatatgtga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
54946152 |
tgagaaacattgtgtgtataaatatgtga |
54946124 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 10981 - 10741
Alignment:
| Q |
1 |
ctattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatattttttactatcatgtcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
10981 |
ctattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcat |
10882 |
T |
|
| Q |
101 |
tgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaata |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10881 |
tgagaaacattgtgtatataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaata |
10782 |
T |
|
| Q |
201 |
ttctattactgttttttccactcattttaactcttcatctc |
241 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10781 |
ttgtcttactgttttttccactcattttaacttttcatctc |
10741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 16856462 - 16856716
Alignment:
| Q |
1 |
ctattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatattttttactatcatgtcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |
|
|
| T |
16856462 |
ctattgatgtcaataacaccaaaccaactttctacacttttcctctaccatgctatctaaatgttctaatctcatatcatgttttttactatcacatcat |
16856561 |
T |
|
| Q |
101 |
tgagaaacattgtgtgtataaatatgtgattttgt--------------gcaccaaattttgggttttgttcatcaccacattcaagcaacaattggtta |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16856562 |
tgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggcaccaaattttgggttttgttcatcaccgcattcaagcaacaattggtta |
16856661 |
T |
|
| Q |
187 |
gttcatcttcaatattctattactgttttttccactcattttaactcttcatctc |
241 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16856662 |
gttcatcttcaatattgtattacttttttttccactcattttaactcttcatctc |
16856716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 26616004 - 26615892
Alignment:
| Q |
129 |
attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattctattactgttttttccactcatttt |
228 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||| || ||||| |||| ||| |||||||||| |
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|
| T |
26616004 |
attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactcatttt |
26615905 |
T |
|
| Q |
229 |
aactcttcatctc |
241 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26615904 |
aactcttcatctc |
26615892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 26721932 - 26721820
Alignment:
| Q |
129 |
attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattctattactgttttttccactcatttt |
228 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||| || ||||| |||| ||| |||||||||| |
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|
| T |
26721932 |
attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactcatttt |
26721833 |
T |
|
| Q |
229 |
aactcttcatctc |
241 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26721832 |
aactcttcatctc |
26721820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 47933450 - 47933322
Alignment:
| Q |
1 |
ctattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatattttttactatcatgtcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||| |
|
|
| T |
47933450 |
ctattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttataatcttatatcatgttttttactatcgtgtcat |
47933351 |
T |
|
| Q |
101 |
tgagaaacattgtgtgtataaatatgtga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47933350 |
tgagaaacattgtgtgtataaatatgtga |
47933322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 51167531 - 51167421
Alignment:
| Q |
108 |
cattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattctatt |
207 |
Q |
| |
|
|||||||||||||||| |||| |||||||| |||||||||| |||||||||||||||| | |||||||| |||| | |||| |||||||| ||||||| |
|
|
| T |
51167531 |
cattgtgtgtataaattcgtgaatttgtgcagcaaattttggattttgttcatcaccacttccaagcaactattgaattgttcctcttcaattttctatt |
51167432 |
T |
|
| Q |
208 |
actgttttttc |
218 |
Q |
| |
|
| ||||||||| |
|
|
| T |
51167431 |
attgttttttc |
51167421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 653423 - 653324
Alignment:
| Q |
117 |
tataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattctattactgttttt |
216 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||||||||||||||| || ||||||||| |||||| | | ||||||| || || ||||| ||||||| |
|
|
| T |
653423 |
tataaatatgttattttttgcaccaaagtttgggttttgttcatcacaactttcaagcaataattggatggaacatcttcgattttgtattattgttttt |
653324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 40072225 - 40072087
Alignment:
| Q |
98 |
cattgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttca |
197 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||| ||| | ||||||||||||||||||||| ||| | | ||||||||| |||||| || |||||||||| |
|
|
| T |
40072225 |
cattgaaaaagattgtgtgtataagtatgtagtttctttcaccaaattttgggttttgttgttcatccctttcaagcaataattggataattcatcttca |
40072126 |
T |
|
| Q |
198 |
atattctattactgttttttccactcattttaactcttca |
237 |
Q |
| |
|
|| || ||||||| || ||||||||| ||| |||||||| |
|
|
| T |
40072125 |
attttgtattact-cttattccactcacttttactcttca |
40072087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 26230881 - 26230828
Alignment:
| Q |
4 |
ttgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatc |
57 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |
|
|
| T |
26230881 |
ttgatgtcaataacaccaaaccatgtttctacacttttcgtctatcatgctatc |
26230828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 27280953 - 27280829
Alignment:
| Q |
109 |
attgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattctatta |
208 |
Q |
| |
|
|||||| ||||||||||||||||||||| || || ||||||| ||||||||| ||||||||| |||||| ||||||||||||||| || |||| |
|
|
| T |
27280953 |
attgtgcgtataaatatgtgattttgtgtac-------tgagttttgtccatcaccactttcaagcaataattggatagttcatcttcaattttatattg |
27280861 |
T |
|
| Q |
209 |
ctgttttttccactcattttaactcttcatctc |
241 |
Q |
| |
|
|| |||||||| ||| ||| ||||||||||| |
|
|
| T |
27280860 |
atg-tttttccagtcactttttctcttcatctc |
27280829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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