View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_61 (Length: 244)
Name: NF1507_low_61
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 1571234 - 1571330
Alignment:
| Q |
13 |
gataatacttcaaatgtagtatataaagaagttttccgaaatgtgtaattataaaaagagaaatgtttcaagtgccaatttggatgcgttaatttag |
109 |
Q |
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| T |
1571234 |
gataatacttcaaatgtagtatataaagaagttttccgaaatgtgtaattataaaaagagaaatgtttcaagtgccaatttggatgggttaatttag |
1571330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 1571331 - 1571382
Alignment:
| Q |
178 |
accaataaaagaagcatgagcgttcttggtgaaggttgagtgttgagaattg |
229 |
Q |
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| T |
1571331 |
accaataaaagaagcatgaacgttcttggtgaaggttgagtgttgagaattg |
1571382 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 32909768 - 32909718
Alignment:
| Q |
137 |
aatgttagggtcacaccctctaacacacccttctaacatacaccaataaaa |
187 |
Q |
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| T |
32909768 |
aatgttagggtcacaccctctaacacactcctctaacacaccccaataaaa |
32909718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 31202201 - 31202251
Alignment:
| Q |
137 |
aatgttagggtcacaccctctaacacacccttctaacatacaccaataaaa |
187 |
Q |
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| T |
31202201 |
aatgctagggtcacaccctctaacacactcctctaacacaccccaataaaa |
31202251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 166
Target Start/End: Original strand, 32909302 - 32909331
Alignment:
| Q |
137 |
aatgttagggtcacaccctctaacacaccc |
166 |
Q |
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| T |
32909302 |
aatgttagggtcacaccctctaacacaccc |
32909331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 2168114 - 2168074
Alignment:
| Q |
147 |
tcacaccctctaacacacccttctaacatacaccaataaaa |
187 |
Q |
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| T |
2168114 |
tcacaccctctaacacactcttttaacacacaccaataaaa |
2168074 |
T |
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