View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_7 (Length: 572)
Name: NF1507_low_7
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 72 - 304
Target Start/End: Complemental strand, 50326419 - 50326187
Alignment:
| Q |
72 |
taaatgtcacaaattggaagattaaaaacaaggctaaaaatcccaacaggtttagaatatccctgttagaagatttgcagcagttgaaatcgcagctccg |
171 |
Q |
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| T |
50326419 |
taaatgtcacaaattggaagattaaaaacaaggctaaaaatcccaacaggtttagaatatccctgttagaagatttgcagcagttgaaatcgcagctccg |
50326320 |
T |
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| Q |
172 |
gtaatagcacattgcgcaatctgttcatgagaagtgttatctgatgtacatgcaagtgctgcaccagtgattgctccagcaactgcactatttttctgca |
271 |
Q |
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| T |
50326319 |
gtaatagcacattgcgcaatctgttcatgagatgtgttatctgatgtacatgcaagtgctgctccagtgattgctccagcaactgcactatttttctgca |
50326220 |
T |
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| Q |
272 |
acagaataaataattactcaagcacatgtaata |
304 |
Q |
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| T |
50326219 |
acagaataaataattactcaagcacatgtaata |
50326187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 345 - 572
Target Start/End: Complemental strand, 50326180 - 50325948
Alignment:
| Q |
345 |
tattattcacaccagtgatgaagagaggcttgcccttgttccttttacaaaaaa-tgtatcataaatctagttatttagaacattacccagtcatgagta |
443 |
Q |
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| T |
50326180 |
tattattcacaccagtgatgaagagaggcttgcccttgttccttttacaaaaaaatgtatcataaatctagttatttagaacattacccagtcatgagta |
50326081 |
T |
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| Q |
444 |
ccacgagcttccttcatcccatatgtgagtcctgaatatagtcctgcagccaaccctgcatttttcgaaaaatttgaagg----atcatttccacaatcc |
539 |
Q |
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| T |
50326080 |
ccacgagcttccttcatcccatatgtgagtcctgaatatagtcctgcagccaaccctgcatttttcgaaaaatttgaaggatatatcatttccacaatcc |
50325981 |
T |
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| Q |
540 |
ttctagataattcttatacgcaataattaaaga |
572 |
Q |
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| T |
50325980 |
ttctagataattcttatacgcaataattaaaga |
50325948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 50326515 - 50326457
Alignment:
| Q |
19 |
cggagacaacacctttgaaaaagagaactacaaattcagaaagaaatagttgctaaatg |
77 |
Q |
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| T |
50326515 |
cggagacaacacatttgaaaaagagaactacaaattcagaaagaaatagttgctaaatg |
50326457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 271
Target Start/End: Original strand, 13202291 - 13202440
Alignment:
| Q |
122 |
tttagaatatccctgttagaagatttgcagcagttgaaatcgcagctccggtaatagcacattgcgcaatctgttcatgagaagtgttatctgatgtaca |
221 |
Q |
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| T |
13202291 |
tttagaaaatccctttgagaagatttgcaacagttgagattgcagctccagtgatagcacattgaacaacatgttcatgtgtggagtcttccaatgtaag |
13202390 |
T |
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| Q |
222 |
tgcaagtgctgcaccagtgattgctccagcaactgcactatttttctgca |
271 |
Q |
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| T |
13202391 |
tgcaagggtagccccggtgattgctccagcaactgcactgtttttctgca |
13202440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 13202643 - 13202711
Alignment:
| Q |
427 |
ttacccagtcatgagtaccacgagcttccttcatcccatatgtgagtcctgaatatagtcctgcagcca |
495 |
Q |
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| T |
13202643 |
ttacccagtcatgagctcctcgagcttccttcagcccatatgttaggccggagtatattcctgcagcca |
13202711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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