View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_72 (Length: 227)
Name: NF1507_low_72
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 5190540 - 5190339
Alignment:
| Q |
7 |
atgagaattaatataccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatcagacggtggagtattagtcccttca |
106 |
Q |
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| T |
5190540 |
atgagaaataatataccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatcagacggtggagtattagtcccttca |
5190441 |
T |
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| Q |
107 |
acattcttcattggaatctctactacccttttctttatacctcgcctattatacattaattaacatgcaaaattattttctacagatcaatagttgagat |
206 |
Q |
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| T |
5190440 |
acattcttcattggaatctctactactcttttctttatacctcgcctattatacattaattaacatggaaaattattttctacagatcaatagttgagat |
5190341 |
T |
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| Q |
207 |
gt |
208 |
Q |
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|| |
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| T |
5190340 |
gt |
5190339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 35205472 - 35205543
Alignment:
| Q |
20 |
taccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatcagacggtgga |
91 |
Q |
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| T |
35205472 |
taccttggataaggggagcctttgatgggcttttgaccgtactttctccaagcccatgaatccgacggtgga |
35205543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 12166315 - 12166370
Alignment:
| Q |
20 |
taccttggataaggggaacctttgatgggtttctgaccatactttctccaagccca |
75 |
Q |
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| T |
12166315 |
taccttggataaggtgaacctttaataggcttctgaccatattttctccaagccca |
12166370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 36065056 - 36064978
Alignment:
| Q |
19 |
ataccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatcagacggtggagtatta |
97 |
Q |
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| T |
36065056 |
atacctgggataaggcgaacctttgatgggtttctggccatattttctccatgcccatgaatctgaaggtggtgtatta |
36064978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 39255755 - 39255806
Alignment:
| Q |
20 |
taccttggataaggggaacctttgatgggtttctgaccatactttctccaag |
71 |
Q |
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| T |
39255755 |
taccttggatgaggtgaacctttaataggtttctgaccatattttctccaag |
39255806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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