View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_74 (Length: 222)
Name: NF1507_low_74
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 48596830 - 48597014
Alignment:
| Q |
16 |
ataattctacgttacagatgttcttacgctttggccaatctttcgatataattataacaatatatagtaataatacgattca-ttgtactatggtttaat |
114 |
Q |
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| T |
48596830 |
ataattctatgttacagatgttcttacgctttggccattctttcgatataattataacaatatatagtaataatacgattcagttgtactatggtttaat |
48596929 |
T |
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| Q |
115 |
tctgttacttaatataaaaagttaggcaaacactttttgggcatacaccatgagaaaaagagatctagaagagtagtatgatacg |
199 |
Q |
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| T |
48596930 |
tctgttacttaatataaaaagttaggcaaacaccttttgggcatacaccatgagaaaaagagatctagaagagtggtatgatacg |
48597014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 48591418 - 48591479
Alignment:
| Q |
16 |
ataattctacgttacagatgttcttacgctttggccaatctttcgatataattataacaata |
77 |
Q |
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| T |
48591418 |
ataattctatgttacagatgttcttacgcattggccaatctttcgatataattataacaata |
48591479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 48601113 - 48601174
Alignment:
| Q |
16 |
ataattctacgttacagatgttcttacgctttggccaatctttcgatataattataacaata |
77 |
Q |
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| T |
48601113 |
ataattctatgttacagatgttcttacgcattggccaatctttcgatataattataacaata |
48601174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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