View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1507_low_75 (Length: 220)
Name: NF1507_low_75
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_75 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 50326492 - 50326724
Alignment:
| Q |
1 |
tctttttcaaatgtgttgtctctggtggttttcattgataatatagttagtgttagtaatatactagcagtacttaagagaacagttaaatg-------- |
92 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50326492 |
tctttttcaaatgtgttgtctccggtggttttcattgataatatagttagtattagtaatatactagcagtacttaagagaacagttaaatgtttgagtg |
50326591 |
T |
|
| Q |
93 |
-----gatcggttttgttttcattttacaaaagtaaacaaagaaaagataagttttgcattaaacaagattttctatactttttaatacttaaaagttcc |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50326592 |
taatggatcggttttgttttcattttacaaaagtaaacaaaaaaaagataagttttgcattaaacaagattttctatactttttaatacttaaaagttcc |
50326691 |
T |
|
| Q |
188 |
aagatatttttactgtacttgtaaattcaaact |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
50326692 |
aagatatttttactgtacttgtaaattcaaact |
50326724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University