View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_77 (Length: 215)
Name: NF1507_low_77
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_77 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 28906037 - 28906203
Alignment:
| Q |
13 |
gagatgaacaggcaaaggcttgaaaagataacaaacaatgggattgaagtgaacatgactctctattggaagagtaacactatgatatgtttttctaatt |
112 |
Q |
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| T |
28906037 |
gagatgaacaggcaaaggcttgataagataacaaacaatgggattgaagtgaacatgactctctattggaagagtaacactatgatatgtttttctaatt |
28906136 |
T |
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| Q |
113 |
tttgttactatgttttctcataatttgttctagctccatccaccgctttaaataatggtcacattag |
179 |
Q |
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| T |
28906137 |
tttgttactatgttttctcataatttgttctagctccatccaccgctttaaataatggtcacattag |
28906203 |
T |
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Target: chr2 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 32143142 - 32143300
Alignment:
| Q |
18 |
gaacaggcaaaggcttgaaaagataacaaacaatgggattgaagtgaacatgactctctattggaagagtaacactatgatatgtttttctaatttttgt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32143142 |
gaacaggcaaaggcttgaaaagataacaaacaatgggatcgaagtaaacatgaatctctattggaagagtaacactatgatatgtttttctaatttttgt |
32143241 |
T |
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| Q |
118 |
tactatgttttctcataatttgttctagctccatccaccgctttaaataatggtcacat |
176 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32143242 |
tactatgttttgtgataatttgttctagctccatccaccgctttaaataatggtcacat |
32143300 |
T |
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