View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_78 (Length: 211)
Name: NF1507_low_78
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 6488958 - 6489161
Alignment:
| Q |
1 |
ttttgtgctggagaagatgctatcaccgctggaaaaagtattgccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatgctc |
100 |
Q |
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| T |
6488958 |
ttttgtgccggagaagatgctatcaccgctggaaaaagtattgccgggttgaatgaagcaggtttacgtggaatgctggtttatggcgttgaagatgctc |
6489057 |
T |
|
| Q |
101 |
atgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaatctcttctttatttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6489058 |
atgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaatctcttctttatttca |
6489157 |
T |
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| Q |
201 |
tctc |
204 |
Q |
| |
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|||| |
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| T |
6489158 |
tctc |
6489161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 6328508 - 6328325
Alignment:
| Q |
1 |
ttttgtgctggagaagatgctatcaccgctggaaaaagtatt-gccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatgct |
99 |
Q |
| |
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||||||||||||||||||||||| || |||||||| ||||| | ||| |||||||| || |||||||| ||||| |||| ||| ||||||||||| |
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| T |
6328508 |
ttttgtgctggagaagatgctattactgctggaaagagtataaggtctgtt-aatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgca |
6328410 |
T |
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| Q |
100 |
catgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
184 |
Q |
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| T |
6328409 |
catgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
6328325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 6336066 - 6335883
Alignment:
| Q |
1 |
ttttgtgctggagaagatgctatcaccgctggaaaaagtatt-gccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatgct |
99 |
Q |
| |
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||||||||||||||||||||||| || |||||||| ||||| | ||| |||||||| || |||||||| ||||| |||| ||| ||||||||||| |
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| T |
6336066 |
ttttgtgctggagaagatgctattactgctggaaagagtataaggtctgtt-aatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgca |
6335968 |
T |
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| Q |
100 |
catgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
184 |
Q |
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||||| |||| ||| |||||||| ||||| ||||| |||||||| || |||||||| |||| ||| |||||||| ||||| |||| |
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| T |
6335967 |
catgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
6335883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 6351051 - 6350868
Alignment:
| Q |
1 |
ttttgtgctggagaagatgctatcaccgctggaaaaagtatt-gccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatgct |
99 |
Q |
| |
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||||||||||||||||||||||| || |||||||| ||||| | ||| |||||||| || |||||||| ||||| |||| ||| ||||||||||| |
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| T |
6351051 |
ttttgtgctggagaagatgctattactgctggaaagagtataaggtctgtt-aatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgca |
6350953 |
T |
|
| Q |
100 |
catgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
184 |
Q |
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||||| |||| ||| |||||||| ||||| ||||| |||||||| || |||||||| |||| ||| |||||||| ||||| |||| |
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| T |
6350952 |
catgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
6350868 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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