View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507_low_81 (Length: 206)

Name: NF1507_low_81
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507_low_81
NF1507_low_81
[»] chr7 (4 HSPs)
chr7 (16-172)||(18398749-18398906)
chr7 (37-111)||(18151950-18152024)
chr7 (24-123)||(6239185-6239281)
chr7 (31-106)||(32401781-32401855)
[»] chr4 (5 HSPs)
chr4 (16-111)||(27259096-27259191)
chr4 (25-123)||(21201942-21202039)
chr4 (22-125)||(2916476-2916579)
chr4 (16-111)||(35944929-35945024)
chr4 (85-125)||(40088574-40088614)
[»] chr2 (3 HSPs)
chr2 (44-122)||(14918217-14918295)
chr2 (24-122)||(42296174-42296268)
chr2 (126-170)||(33855815-33855859)
[»] chr3 (2 HSPs)
chr3 (32-100)||(896369-896437)
chr3 (129-184)||(3283675-3283731)
[»] chr1 (1 HSPs)
chr1 (21-125)||(52973671-52973773)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 18398906 - 18398749
Alignment:
Q  16 caaataactcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttc 115  Q
    |||| |||||||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  18398906 caaagaactcaccttcatcctcaaagaattgtaatttctcttttgtaaactctaatcttatctaatgatttatgcaattatgtttttatcccttatcttc 18398807  T
Q  116 tctatttctaaggttcaactcaccataagttaaacc-atccttgtggtttagacatgg 172  Q
    || ||||||| | |||| |||||||| || ||||||  | ||| ||||||||||||||    
T  18398806 tccatttctacgattcagctcaccatgagctaaacctcttcttatggtttagacatgg 18398749  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 18151950 - 18152024
Alignment:
Q  37 caaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttat 111  Q
    |||||| |||||||||||||||  ||| ||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  18151950 caaaggattgtaatttctcttttataaactctaatcttatcaaatgatttatgcaattatgtctttatttcttat 18152024  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 6239185 - 6239281
Alignment:
Q  24 tcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttctctatttc 123  Q
    ||||||||||||||||||| || |||||| ||||  |||| ||||||||||||   | ||||||||||||||||||||||| |||||| ||||| |||||    
T  6239185 tcaccttcatcctcaaaggattttaatttatcttgtgtaaactctaatcttat---aagatttatgcaattatgtttttatatcttatcttctccatttc 6239281  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 32401781 - 32401855
Alignment:
Q  31 catcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatct 106  Q
    |||||||||||| |||||||| ||||||  ||| ||||| | |  | |||||||||||||||||||||||||||||    
T  32401781 catcctcaaaggattgtaatt-ctcttttataaactctactttattttaatgatttatgcaattatgtttttatct 32401855  T

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Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 27259191 - 27259096
Alignment:
Q  16 caaataactcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttat 111  Q
    |||| ||| ||||||||| |||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  27259191 caaagaacccaccttcattctcaaaggattgtaatttctcttttgtaaactctaatcttatctaatgatttatgcaattttgtttttatctcttat 27259096  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 21202039 - 21201942
Alignment:
Q  25 caccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttctctatttc 123  Q
    |||||||||  ||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  21202039 caccttcattttcaaaggattg-aatttctcttttgtaaactctaatcttatctaatgatttatgcaattgtgtttttatctcttatcttctccatttc 21201942  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 2916579 - 2916476
Alignment:
Q  22 actcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttctctatt 121  Q
    |||||||||||| |||||||| || |||||||| |||  ||| |||||| ||||||||||| |||||||||| ||||||||||||||||| || || |||    
T  2916579 actcaccttcattctcaaaggattataatttcttttttataaactctaagcttatctaatggtttatgcaataatgtttttatctcttatattttccatt 2916480  T
Q  122 tcta 125  Q
    ||||    
T  2916479 tcta 2916476  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 35944929 - 35945024
Alignment:
Q  16 caaataactcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttat 111  Q
    |||| ||||||| || ||||||  ||| ||||||||| ||||  || | |||||||||||| |||||||||| |||||||||||||||||||||||    
T  35944929 caaagaactcacatttatcctcggaggattgtaatttgtcttacgttaactctaatcttatttaatgatttaggcaattatgtttttatctcttat 35945024  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 40088614 - 40088574
Alignment:
Q  85 ttatgcaattatgtttttatctcttattttctctatttcta 125  Q
    ||||||||||||||||||||||||||| || || |||||||    
T  40088614 ttatgcaattatgtttttatctcttatattttccatttcta 40088574  T

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Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 14918217 - 14918295
Alignment:
Q  44 ttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttctctattt 122  Q
    |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  14918217 ttgttatttctcttttgtaaactctaatcttatctaatgatttatgcaattatgtttttatctcttatcttctccattt 14918295  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 42296268 - 42296174
Alignment:
Q  24 tcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttctctattt 122  Q
    ||||||||||||||| | | ||||||||||||||| | || || ||||  ||    || ||||||||||||||||||||| || |||| ||||||||||    
T  42296268 tcaccttcatcctcagaagattgtaatttctcttttgcaaactataatagta----ataatttatgcaattatgtttttaactattatcttctctattt 42296174  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 33855859 - 33855815
Alignment:
Q  126 aggttcaactcaccataagttaaaccatccttgtggtttagacat 170  Q
    |||||||||||||||| || |||||| | ||||||||||||||||    
T  33855859 aggttcaactcaccatgagctaaacccttcttgtggtttagacat 33855815  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 896369 - 896437
Alignment:
Q  32 atcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgttt 100  Q
    ||||||||||| ||| ||||||||||| ||||  |||| ||||||||||||||||||||||||||||||    
T  896369 atcctcaaaggattgaaatttctcttttgtaaattctattcttatctaatgatttatgcaattatgttt 896437  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 3283675 - 3283731
Alignment:
Q  129 ttcaactcaccataagttaaacca-tccttgtggtttagacatggtgacgctatgat 184  Q
    |||| |||||||| |||||||||  ||||||||||||||||||||||| | ||||||    
T  3283675 ttcagctcaccatgagttaaacccctccttgtggtttagacatggtgaggttatgat 3283731  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 52973773 - 52973671
Alignment:
Q  21 aactcaccttcatcctcaaaggtttgtaatttctctttagtaagctctaatcttatctaatgatttatgcaattatgtttttatctcttattttctctat 120  Q
    |||||||||||||||||||||| ||||||||||||||| |||  ||||| |||    ||||||| ||| || |||||||||| ||| |||| ||||| ||    
T  52973773 aactcaccttcatcctcaaaggattgtaatttctcttttgtagactctactct--cttaatgatatattcagttatgtttttgtcttttatcttctccat 52973676  T
Q  121 ttcta 125  Q
    |||||    
T  52973675 ttcta 52973671  T

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