View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507_low_9 (Length: 539)

Name: NF1507_low_9
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507_low_9
NF1507_low_9
[»] chr7 (6 HSPs)
chr7 (44-351)||(5715669-5715976)
chr7 (414-522)||(5715122-5715224)
chr7 (469-518)||(30133982-30134031)
chr7 (478-519)||(42656457-42656498)
chr7 (480-520)||(5276168-5276208)
chr7 (480-520)||(31341138-31341178)
[»] chr5 (2 HSPs)
chr5 (478-519)||(11615450-11615491)
chr5 (466-520)||(7096213-7096267)
[»] chr2 (10 HSPs)
chr2 (469-518)||(5045245-5045294)
chr2 (472-520)||(5998788-5998836)
chr2 (469-515)||(7825185-7825231)
chr2 (478-520)||(9530810-9530852)
chr2 (478-520)||(17952787-17952829)
chr2 (469-519)||(31461371-31461421)
chr2 (488-521)||(26167698-26167731)
chr2 (478-519)||(32098395-32098436)
chr2 (488-520)||(3458609-3458641)
chr2 (492-520)||(10177746-10177774)
[»] chr1 (5 HSPs)
chr1 (469-518)||(4200162-4200211)
chr1 (478-520)||(35080156-35080198)
chr1 (480-520)||(1730836-1730876)
chr1 (480-520)||(43420025-43420065)
chr1 (480-520)||(43420202-43420242)
[»] chr8 (6 HSPs)
chr8 (469-520)||(6918265-6918316)
chr8 (469-515)||(1664316-1664362)
chr8 (466-519)||(41620378-41620431)
chr8 (471-515)||(1892302-1892346)
chr8 (480-520)||(31315539-31315579)
chr8 (480-520)||(34788513-34788553)
[»] chr4 (1 HSPs)
chr4 (469-520)||(51044545-51044596)
[»] scaffold0199 (1 HSPs)
scaffold0199 (469-515)||(6757-6803)
[»] chr6 (2 HSPs)
chr6 (482-520)||(2027492-2027530)
chr6 (480-517)||(33385480-33385517)
[»] chr3 (5 HSPs)
chr3 (444-518)||(41159017-41159091)
chr3 (469-515)||(45236687-45236733)
chr3 (480-521)||(20192691-20192732)
chr3 (480-520)||(49587002-49587042)
chr3 (481-521)||(52450137-52450177)
[»] scaffold0590 (1 HSPs)
scaffold0590 (480-520)||(1160-1200)
[»] scaffold0275 (1 HSPs)
scaffold0275 (480-520)||(2775-2815)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 44 - 351
Target Start/End: Complemental strand, 5715976 - 5715669
Alignment:
Q  44 aagtggttctcaacaagtgtaacaattattcaaattttcaataatttaatgnnnnnnngaatttgaaagagatatttaaaccctcttgagattttgtgga 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||||||    
T  5715976 aagtggttctcaacaagtgtaacaattattcaaattttcaataatttaacgattttttgaatttgaaagagatatttaaaccctcttgagattttgtgga 5715877  T
Q  144 aagatattattttctaaaaatagtttatcatgaatctgtgcccacacctatttcagccaaacaccattacaagcttctcaaccattattctcattattga 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  5715876 aagatattattttctaaaaatagtttatcatgaatctgtgcccacacctatttcagccaaacacaattacaagcttctcaatcattattctcattattga 5715777  T
Q  244 caaaaaccattgaagacttttcaatcattgagtccattattgtcataaagacatcaaaacaaaatgtaataaaacaagaaactcaacaccaatagaagag 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  5715776 caaaaaccattgaagacttttcaatcattgagtccattattgtcataaagacttcaaaacaaaatgtaataaaacaagaagctcaacaccaacagaagag 5715677  T
Q  344 aaaagaga 351  Q
    ||||||||    
T  5715676 aaaagaga 5715669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 414 - 522
Target Start/End: Complemental strand, 5715224 - 5715122
Alignment:
Q  414 ttatggtgacttagaccttgtttgggaaaacaacgtaattaaacgctgatcgtacaagtgtttctatataagcaatttttataacgaaagataaaataaa 513  Q
    |||||||||||||||| |||||||  ||| |||| | |||||||||| |      |||||||||||||||||| |||| |||||||||||||||||||||    
T  5715224 ttatggtgacttagactttgtttgaaaaaccaacatgattaaacgctta------aagtgtttctatataagctatttctataacgaaagataaaataaa 5715131  T
Q  514 gtcaaacaa 522  Q
    |||||||||    
T  5715130 gtcaaacaa 5715122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 518
Target Start/End: Original strand, 30133982 - 30134031
Alignment:
Q  469 aagtgtttctatataagcaatttttataacgaaagataaaataaagtcaa 518  Q
    |||||||| | ||||||| ||||||| ||| |||||||||||||||||||    
T  30133982 aagtgtttatgtataagctatttttacaacaaaagataaaataaagtcaa 30134031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 519
Target Start/End: Original strand, 42656457 - 42656498
Alignment:
Q  478 tatataagcaatttttataacgaaagataaaataaagtcaaa 519  Q
    ||||||||| |||| |||||| ||||||||||||||||||||    
T  42656457 tatataagctatttctataacaaaagataaaataaagtcaaa 42656498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 5276168 - 5276208
Alignment:
Q  480 tataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||| ||||||||||| |||||||| ||||||||||||    
T  5276168 tataagctatttttataacaaaagataacataaagtcaaac 5276208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 31341138 - 31341178
Alignment:
Q  480 tataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||| |||| |||||| |||||||||||||||||||||    
T  31341138 tataagctatttgtataacaaaagataaaataaagtcaaac 31341178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 478 - 519
Target Start/End: Original strand, 11615450 - 11615491
Alignment:
Q  478 tatataagcaatttttataacgaaagataaaataaagtcaaa 519  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  11615450 tatataagctatttttataacaaaagataaaataaagtcaaa 11615491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 520
Target Start/End: Complemental strand, 7096267 - 7096213
Alignment:
Q  466 tacaagtgtttctatataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    |||||||| || | ||||||| |||| |||||| |||||||||||||||||||||    
T  7096267 tacaagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 7096213  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 469 - 518
Target Start/End: Complemental strand, 5045294 - 5045245
Alignment:
Q  469 aagtgtttctatataagcaatttttataacgaaagataaaataaagtcaa 518  Q
    |||||||| | ||||||| ||||||||||| |||||||||||||||||||    
T  5045294 aagtgtttatgtataagctatttttataacaaaagataaaataaagtcaa 5045245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 5998836 - 5998788
Alignment:
Q  472 tgtttctatataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||| ||||    
T  5998836 tgtttatatataagctatttttataacaaaagataaaataaagttaaac 5998788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 7825185 - 7825231
Alignment:
Q  469 aagtgtttctatataagcaatttttataacgaaagataaaataaagt 515  Q
    |||||||||| ||||||| ||||||||||| ||||||||| ||||||    
T  7825185 aagtgtttctgtataagctatttttataacaaaagataaagtaaagt 7825231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 9530852 - 9530810
Alignment:
Q  478 tatataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||    
T  9530852 tatataagctatttttataatgaaagataaaataaagtaaaac 9530810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 17952829 - 17952787
Alignment:
Q  478 tatataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||||| |||| |||||| |||||||||||||||||||||    
T  17952829 tatataagctatttctataacaaaagataaaataaagtcaaac 17952787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 519
Target Start/End: Original strand, 31461371 - 31461421
Alignment:
Q  469 aagtgtttctatataagcaatttttataacgaaagataaaataaagtcaaa 519  Q
    ||||| || ||||||||| |||| |||||| ||||||||||||||||||||    
T  31461371 aagtggttatatataagctatttctataacaaaagataaaataaagtcaaa 31461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 521
Target Start/End: Original strand, 26167698 - 26167731
Alignment:
Q  488 atttttataacgaaagataaaataaagtcaaaca 521  Q
    ||||||||||| ||||||||||||||||||||||    
T  26167698 atttttataacaaaagataaaataaagtcaaaca 26167731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 519
Target Start/End: Complemental strand, 32098436 - 32098395
Alignment:
Q  478 tatataagcaatttttataacgaaagataaaataaagtcaaa 519  Q
    ||||||||| |||| |||||| ||||||||||||||||||||    
T  32098436 tatataagctatttctataacaaaagataaaataaagtcaaa 32098395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 520
Target Start/End: Original strand, 3458609 - 3458641
Alignment:
Q  488 atttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||||||| |||||||||||||||||||||    
T  3458609 atttttataacaaaagataaaataaagtcaaac 3458641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 520
Target Start/End: Complemental strand, 10177774 - 10177746
Alignment:
Q  492 ttataacgaaagataaaataaagtcaaac 520  Q
    |||||||||||||||||||||||||||||    
T  10177774 ttataacgaaagataaaataaagtcaaac 10177746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 469 - 518
Target Start/End: Original strand, 4200162 - 4200211
Alignment:
Q  469 aagtgtttctatataagcaatttttataacgaaagataaaataaagtcaa 518  Q
    |||||||| ||||||||  ||||||||||| |||||||||||||||||||    
T  4200162 aagtgtttatatataagttatttttataacaaaagataaaataaagtcaa 4200211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 35080198 - 35080156
Alignment:
Q  478 tatataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    |||||||||||||| |||||| ||| |||||||||||||||||    
T  35080198 tatataagcaatttctataacaaaaaataaaataaagtcaaac 35080156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 1730836 - 1730876
Alignment:
Q  480 tataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||| |||||| |||| |||||||||||||||||||||    
T  1730836 tataagctatttttttaaccaaagataaaataaagtcaaac 1730876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 43420025 - 43420065
Alignment:
Q  480 tataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  43420025 tataagctatttccataacgaaagataaaataaagtcaaac 43420065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 43420202 - 43420242
Alignment:
Q  480 tataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  43420202 tataagctatttccataacgaaagataaaataaagtcaaac 43420242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 520
Target Start/End: Complemental strand, 6918316 - 6918265
Alignment:
Q  469 aagtgtttctatataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    |||||||| ||||||||| |||| |||||  |||||||||||||||||||||    
T  6918316 aagtgtttgtatataagctatttatataataaaagataaaataaagtcaaac 6918265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 1664316 - 1664362
Alignment:
Q  469 aagtgtttctatataagcaatttttataacgaaagataaaataaagt 515  Q
    |||||||| ||||||||| ||||||||||| |||| |||||||||||    
T  1664316 aagtgtttatatataagctatttttataacaaaaggtaaaataaagt 1664362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 519
Target Start/End: Complemental strand, 41620431 - 41620378
Alignment:
Q  466 tacaagtgtttctatataagcaatttttataacgaaagataaaataaagtcaaa 519  Q
    |||||||| || ||||||||  |||||| |||| ||||||||||||||||||||    
T  41620431 tacaagtgcttatatataagttatttttgtaacaaaagataaaataaagtcaaa 41620378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 515
Target Start/End: Complemental strand, 1892346 - 1892302
Alignment:
Q  471 gtgtttctatataagcaatttttataacgaaagataaaataaagt 515  Q
    |||||| ||||||||| ||||||||||| |||| |||||||||||    
T  1892346 gtgtttatatataagctatttttataacaaaaggtaaaataaagt 1892302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 520
Target Start/End: Complemental strand, 31315579 - 31315539
Alignment:
Q  480 tataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||| ||||||||||  |||||||||||||||||||||    
T  31315579 tataagctatttttataataaaagataaaataaagtcaaac 31315539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 520
Target Start/End: Complemental strand, 34788553 - 34788513
Alignment:
Q  480 tataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||| |||||||| || |||||||||||||||||||||    
T  34788553 tataagctatttttatgaccaaagataaaataaagtcaaac 34788513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 520
Target Start/End: Complemental strand, 51044596 - 51044545
Alignment:
Q  469 aagtgtttctatataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    |||||||| | ||||||| |||| |||||| |||||||||||||||||||||    
T  51044596 aagtgtttatgtataagctatttctataacaaaagataaaataaagtcaaac 51044545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 6757 - 6803
Alignment:
Q  469 aagtgtttctatataagcaatttttataacgaaagataaaataaagt 515  Q
    |||||||| ||||||||| ||||||||||| |||| |||||||||||    
T  6757 aagtgtttatatataagctatttttataacaaaaggtaaaataaagt 6803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 520
Target Start/End: Complemental strand, 2027530 - 2027492
Alignment:
Q  482 taagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  2027530 taagctatttttataacaaaagataaaataaagtcaaac 2027492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 33385480 - 33385517
Alignment:
Q  480 tataagcaatttttataacgaaagataaaataaagtca 517  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  33385480 tataagcaatttttataacaaaagataaaatgaagtca 33385517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 518
Target Start/End: Original strand, 41159017 - 41159091
Alignment:
Q  444 caacgtaattaaacgctgatcgtacaagtgtttctatataagcaatttttataacgaaagataaaataaagtcaa 518  Q
    |||| |||||||||||| |||||| ||||| || | ||||||  |||  |||||| |||||||||||||||||||    
T  41159017 caacttaattaaacgcttatcgtataagtgcttatgtataagttattcctataactaaagataaaataaagtcaa 41159091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 45236687 - 45236733
Alignment:
Q  469 aagtgtttctatataagcaatttttataacgaaagataaaataaagt 515  Q
    |||||||| | ||||||| ||||||||||||||||||||| ||||||    
T  45236687 aagtgtttgtgtataagctatttttataacgaaagataaagtaaagt 45236733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 521
Target Start/End: Complemental strand, 20192732 - 20192691
Alignment:
Q  480 tataagcaatttttataacgaaagataaaataaagtcaaaca 521  Q
    ||||||| |||| |||||| ||||||||||||||||||||||    
T  20192732 tataagctatttatataacaaaagataaaataaagtcaaaca 20192691  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 520
Target Start/End: Complemental strand, 49587042 - 49587002
Alignment:
Q  480 tataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||| |||| |||||| |||||||||||||||||||||    
T  49587042 tataagctatttctataacaaaagataaaataaagtcaaac 49587002  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 521
Target Start/End: Complemental strand, 52450177 - 52450137
Alignment:
Q  481 ataagcaatttttataacgaaagataaaataaagtcaaaca 521  Q
    ||||||||||| |||||| |||||| |||||||||||||||    
T  52450177 ataagcaatttctataacaaaagatgaaataaagtcaaaca 52450137  T

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Target: scaffold0590 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 520
Target Start/End: Complemental strand, 1200 - 1160
Alignment:
Q  480 tataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||| |||| |||||| |||||||||||||||||||||    
T  1200 tataagctatttctataacaaaagataaaataaagtcaaac 1160  T

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Target: scaffold0275 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 2775 - 2815
Alignment:
Q  480 tataagcaatttttataacgaaagataaaataaagtcaaac 520  Q
    ||||||| |||| |||||| |||||||||||||||||||||    
T  2775 tataagctatttctataacaaaagataaaataaagtcaaac 2815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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