View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15080_high_1 (Length: 565)
Name: NF15080_high_1
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Original strand, 4784826 - 4785382
Alignment:
| Q |
1 |
tgacgtaaagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4784826 |
tgacgtgaagagtacaaacatattgttggatgaaaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctacagggatgtcgatgacc |
4784925 |
T |
|
| Q |
101 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4784926 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtg |
4785025 |
T |
|
| Q |
201 |
ttgtgcttcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatga |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4785026 |
ttgtgcttcttgaggtgttgtgtgcgagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatga |
4785125 |
T |
|
| Q |
301 |
aggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcat |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
4785126 |
aggtatggtaattgaagatatggtggacccgttcattaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgtttgcat |
4785225 |
T |
|
| Q |
401 |
gacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaagcttgttggta |
500 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4785226 |
gatgatggaaatcaacgaatgtcgatgagtgatgtggttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaagcttgttggta |
4785325 |
T |
|
| Q |
501 |
ccaaggaaaaggaaaagagtaagcaaaggatagaattggcacattttactgatgatg |
557 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4785326 |
ccaaggaaaaggaaaagagtgagcaaaggatagaattgtcacattttactgatgatg |
4785382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 8 - 557
Target Start/End: Original strand, 4817262 - 4817811
Alignment:
| Q |
8 |
aagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacccatgtca |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4817262 |
aagagtacaaacatattgttggatgaaaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctacagggatgtcgatgacccatgtca |
4817361 |
T |
|
| Q |
108 |
gcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtgttgtgct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4817362 |
gcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaagattgactctaaagtctgatgtgtactctttcggtgttgtgct |
4817461 |
T |
|
| Q |
208 |
tcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgtg |
307 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4817462 |
tcttgaggtgttgtgtgcgagacccccgttggttcggtctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtatg |
4817561 |
T |
|
| Q |
308 |
gtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
4817562 |
gtaattgaagatatggtggacccgttcattaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgtttgcatgatgatg |
4817661 |
T |
|
| Q |
408 |
gaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaagcttgttggtaccaagga |
507 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4817662 |
gaaatcaacgaatgtcgatgagtgatgtggttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaagcttgttggtaccaagga |
4817761 |
T |
|
| Q |
508 |
aaaggaaaagagtaagcaaaggatagaattggcacattttactgatgatg |
557 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4817762 |
aaaggaaaagagtgagcaaaggatagaattgtcacattttactgatgatg |
4817811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 4863014 - 4862525
Alignment:
| Q |
1 |
tgacgtaaagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacc |
100 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| || || ||||| || || |
|
|
| T |
4863014 |
tgacgtgaagagtaccaacatattgttggatgaaaaatgggtggctaaggtgtctgatttcgggttatcaaaagtgggaccaacaggaatgtctatcact |
4862915 |
T |
|
| Q |
101 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtg |
200 |
Q |
| |
|
|| |||||||| ||||||| |||||||| || ||||| ||||||||||||||| | || ||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
4862914 |
cacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactaccttcgtcaaaggttgactctaaaatccgacgtgtattctttcggtg |
4862815 |
T |
|
| Q |
201 |
ttgtgcttcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatga |
300 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| || ||||||||||||| || ||||||||||| ||||| | ||||||||||||| |||||||||||| |
|
|
| T |
4862814 |
ttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgttcttctgaaaagaaaaaagcgagtttagtcgtttggtttcaaaaatgttacaatga |
4862715 |
T |
|
| Q |
301 |
aggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcat |
400 |
Q |
| |
|
|||||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4862714 |
aggtgtcataattgaagagatggtagatccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcat |
4862615 |
T |
|
| Q |
401 |
gacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaag |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
4862614 |
gacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaagatactaag |
4862525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 490
Target Start/End: Original strand, 4698188 - 4698670
Alignment:
| Q |
8 |
aagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacccatgtca |
107 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||| |||| |
|
|
| T |
4698188 |
aagagtaccaacatattgttagatgataaatgggtggctaaggtttctgatttcgggttatcaaaagtgggaccaacaggaatgtcgatgacccacgtca |
4698287 |
T |
|
| Q |
108 |
gcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtgttgtgct |
207 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| ||||| ||||||||| | || ||||||||||| |||||||| || ||||||||||| ||||||||||| |
|
|
| T |
4698288 |
gcactaaggtgaagggtagtctcgggtatttagatcccgaatactaccttcgtcaaaggttgaccctaaagtccgacgtgtactcttttggtgttgtgct |
4698387 |
T |
|
| Q |
208 |
tcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgtg |
307 |
Q |
| |
|
||||||||| |||||||| ||||| || ||||||||||||||||| ||||||||||| ||||| | ||||||| |||| ||||||||||||||||||| |
|
|
| T |
4698388 |
tcttgaggtattgtgtgcgagaccacctttggttcgttctttggaaaagaaaaaagcgagtttagtcttttggttccaaagatgttacaatgaaggtgtg |
4698487 |
T |
|
| Q |
308 |
gtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatg |
407 |
Q |
| |
|
| || ||||| |||||||||||||||||||| ||||||||||| ||| ||| | ||| ||||||| |||||||| || |||||||||||||| |||| |
|
|
| T |
4698488 |
atcatcgaagagatggtggacccgttcataaaggattctataacggctgaatgtctaaaaagttattgccaaatggtgttgagttgtttgcatgatgatg |
4698587 |
T |
|
| Q |
408 |
gaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaag |
490 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
4698588 |
gaaatcaacggatgtcgatgagtgatgttgttggagctttagagtttgcattgcagttggagataagtgaggaggatactaag |
4698670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 4713057 - 4713546
Alignment:
| Q |
1 |
tgacgtaaagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacc |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| || ||||| || ||||| |
|
|
| T |
4713057 |
tgacgttaagagtacaaatatattgttggatgaaaaatgggtggctaaggtttctgatttcggtttatcaaaagtgggaccaacagggatatcaatgact |
4713156 |
T |
|
| Q |
101 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||| | || |||||||||||||| | |||| | ||| | | ||||||||| |||||||| |||||||| ||||| | |
|
|
| T |
4713157 |
catgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtgtactcattcggag |
4713256 |
T |
|
| Q |
201 |
ttgtgcttcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatga |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || |||| || ||||||||||||| |||||| | ||| || || ||| ||| |||||||||||| |
|
|
| T |
4713257 |
ttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttacaatga |
4713356 |
T |
|
| Q |
301 |
aggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcat |
400 |
Q |
| |
|
||||||| || ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| |
|
|
| T |
4713357 |
aggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtgaaatggtgttgagttgtttgcat |
4713456 |
T |
|
| Q |
401 |
gacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaag |
490 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||| ||| | |||| ||||||| ||||||| ||||| |
|
|
| T |
4713457 |
ggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgcgttgaaattggttatgagtggggaggatggtaag |
4713546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 4652645 - 4652330
Alignment:
| Q |
1 |
tgacgtaaagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacc |
100 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||| | ||| |
|
|
| T |
4652645 |
tgacgtgaagagcaccaacatattgttggatgagaaatgggtggctaaggtttctgattttggattatcgaaagtgggaccgacaaggatgtctacaacc |
4652546 |
T |
|
| Q |
101 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtg |
200 |
Q |
| |
|
||||| ||||| |||||||| ||||| || |||||||||||||||||||| || |||| |||||| | |||||||| |||||||||||||| ||||||| |
|
|
| T |
4652545 |
catgttagcacgatggtgaagggtagcctagggtatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtg |
4652446 |
T |
|
| Q |
201 |
ttgtgcttcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatga |
300 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| || ||||||||| |||||||||||| | ||||||| | | | ||||||| ||| ||| ||| |||| |
|
|
| T |
4652445 |
tggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataagaatacagcaagtctagtttgttggtttaaaaaatgctacgatga |
4652346 |
T |
|
| Q |
301 |
aggtgtggtaattgaa |
316 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
4652345 |
aggtgtggcaattgaa |
4652330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 164 - 490
Target Start/End: Original strand, 4854590 - 4854916
Alignment:
| Q |
164 |
aggttgactctaaagtctgatgtgtactctttcggtgttgtgcttcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaag |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||||| || |||| || || |||||||||||||||| |
|
|
| T |
4854590 |
aggttgactctaaagtctgatgtgtactctttcggtgatgtacttcttgagatgttgtgtgcgagaccacctttggatcatttattggataagaaaaaag |
4854689 |
T |
|
| Q |
264 |
caagtttggctgtttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgttt |
363 |
Q |
| |
|
| ||| || || ||| ||| ||||||||||||||| ||| || ||||||| ||||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
4854690 |
tgaacatggttgctttgttcaaaaaatgttacaatgaaggagtgatagttgaagagatggtggacccattcataaaggactctataacaagtgagtgttt |
4854789 |
T |
|
| Q |
364 |
gaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcag |
463 |
Q |
| |
|
||||| ||||||||||||||| || ||||||||||||| |||||||||||||| ||||| ||||||||||| |||||| |||||||| |||| ||| | |
|
|
| T |
4854790 |
gaaattttattgtcaaatggtgttgagttgtttgcatggtgatggaaatcaacggatgtctatgagtgatgtggttggaactttagagcttgcgttgaaa |
4854889 |
T |
|
| Q |
464 |
ttggagatgagtgaggaggatagtaag |
490 |
Q |
| |
|
|||| ||||||| |||| |||||||| |
|
|
| T |
4854890 |
ttggttatgagtggggagaatagtaag |
4854916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 4630034 - 4629568
Alignment:
| Q |
1 |
tgacgtaaagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacc |
100 |
Q |
| |
|
|||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||| || || ||| ||| |
|
|
| T |
4630034 |
tgacgtaaagagcaccaacatactgttggatgagaaatgggtagctaaggtttctgatttcgggttatccaaggtgggacctacaggaataacgactacc |
4629935 |
T |
|
| Q |
101 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtg |
200 |
Q |
| |
|
||||||||||| |||||||| || || || || ||||||||||| |||||||| |||| |||||| | |||||||| ||||| |||||||| || |||| |
|
|
| T |
4629934 |
catgtcagcacgatggtgaaggggagccttggatatttggatcccgaatactatatgctccaaaggctaactctaaaatctgacgtgtactcgtttggtg |
4629835 |
T |
|
| Q |
201 |
ttgtgcttcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatga |
300 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| || ||||||||| |||||||||||| | ||| ||| | | | ||||||||||| ||| | ||||| |
|
|
| T |
4629834 |
tggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataagaatacagctagtctagtttgttggtttcaaaaatgccataatga |
4629735 |
T |
|
| Q |
301 |
aggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcat |
400 |
Q |
| |
|
|||||||| |||||| | || || || || ||| ||| |||||||| ||| |||||| ||||||| |||||| | ||| |||||||| |||||| |
|
|
| T |
4629734 |
aggtgtggcgattgaacaaatagtcgatccattcttaagggattctatcacagttgagtgcttgaaatattattgcaagttggcgttaagttgcttgcat |
4629635 |
T |
|
| Q |
401 |
gacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttgg |
467 |
Q |
| |
|
|| ||||| | ||||||| ||||||||| | || ||||| | |||||||||||||||||| |||| |
|
|
| T |
4629634 |
gatgatgggactcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcattgcaattgg |
4629568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 4666060 - 4665594
Alignment:
| Q |
1 |
tgacgtaaagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacc |
100 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||| |||||| |||| |||||||| || ||||||||||| || |||||||| || ||||| || | ||| |
|
|
| T |
4666060 |
tgacgtgaagagcaccaacatattgttggatgaaaaatggatggcaaaggtttccgactttgggttatccaaggtgggaccgacagggatatcaactacc |
4665961 |
T |
|
| Q |
101 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtg |
200 |
Q |
| |
|
||||||||||| |||||||| || || ||||| ||||||||||| ||||| || |||| |||||| | |||||||| |||||||||||||| ||||||| |
|
|
| T |
4665960 |
catgtcagcacgatggtgaaggggagcctcggatatttggatcccgaatattatatgctccaaaggctaactctaaaatctgatgtgtactcgttcggtg |
4665861 |
T |
|
| Q |
201 |
ttgtgcttcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatga |
300 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| || ||||||||| |||||||||||| | || ||| | | | ||||||| ||| ||||||| |||| |
|
|
| T |
4665860 |
tggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataagaatactgctagtctagtttgttggtttaaaaaatgttacgatga |
4665761 |
T |
|
| Q |
301 |
aggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcat |
400 |
Q |
| |
|
|||||||| ||||||| | || || || || ||| ||| |||||||| ||| ||||| ||||||| |||||| | ||| |||||||| |||||| |
|
|
| T |
4665760 |
aggtgtggcaattgaacaaatagttgatccattcgtaagggattctatcacagatgagtacttgaaatattattgcaagttggcgttaagttgcttgcat |
4665661 |
T |
|
| Q |
401 |
gacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttgg |
467 |
Q |
| |
|
|| ||||| | ||||||| ||||||||| | || ||||| | |||||||||||||||||| |||| |
|
|
| T |
4665660 |
gatgatgggactcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcattgcaattgg |
4665594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 2 - 479
Target Start/End: Complemental strand, 4660928 - 4660448
Alignment:
| Q |
2 |
gacgtaaagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgaccc |
101 |
Q |
| |
|
||||||||||| || ||||||||||||||| | |||||||| ||||||||||| || || |||||||| || |||||||| || ||||| |||| || | |
|
|
| T |
4660928 |
gacgtaaagagcaccaacatattgttggatcacaaatgggtagctaaggtttccgacttcgggttatccaaggtgggaccgacagggatatcgactactc |
4660829 |
T |
|
| Q |
102 |
at---gtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcgg |
198 |
Q |
| |
|
|| |||||||| |||||||| || || || |||||||||||||| ||||||| |||| |||||||| |||||||| ||||| |||||||| ||||| |
|
|
| T |
4660828 |
atcacgtcagcacaatggtgaaggggagccttgggtatttggatccccaatactatatgctccaaaggttaactctaaaatctgaagtgtactcgttcgg |
4660729 |
T |
|
| Q |
199 |
tgttgtgcttcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaat |
298 |
Q |
| |
|
||| ||||||||||||||||||||||| || || || |||||||| |||||||||||| | | | ||| | | | ||||||| ||| ||| || || |
|
|
| T |
4660728 |
tgtggtgcttcttgaggtgttgtgtgctaggccaccattggttcgcgatttggataagaatacaactagtctagtttgttggtttaaaagatgctatgat |
4660629 |
T |
|
| Q |
299 |
gaaggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgc |
398 |
Q |
| |
|
|||||||||| |||||| | || ||||| || | | ||||||||||||| || |||||||||| ||| |||||| | ||| ||||||||||||| |
|
|
| T |
4660628 |
gaaggtgtggcgattgaacaaatagtggatccatccctaaaagattctatcacggatgagtgtttggaatattattgcaagttggcgttaagttgtttgc |
4660529 |
T |
|
| Q |
399 |
atgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagg |
479 |
Q |
| |
|
|||| ||||| | ||||||| ||||||||| | || ||||| | ||||||||||| ||||| |||| | ||||||||| |
|
|
| T |
4660528 |
atgatgatgggactcaacgaccttcaatgagtcaagtggttgggggtttagagtttgtgttgcaattggtggtgagtgagg |
4660448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 4635982 - 4635503
Alignment:
| Q |
1 |
tgacgtaaagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacc |
100 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||| || || || |||| ||| |
|
|
| T |
4635982 |
tgacgtaaagagcaccaacatattgttggatgagaaatggatagctaaggtttctgattttgggttatcaaaggtgggaccgacaggtatatcgactacc |
4635883 |
T |
|
| Q |
101 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtg |
200 |
Q |
| |
|
|| |||||||| || || || || || | |||||||| ||||| || ||||| ||| |||||| | ||||| || || || |||||||| ||||||| |
|
|
| T |
4635882 |
cacgtcagcacaattgttaagggaagcttggggtatttagatcctgagtactatatgttccaaaggcttactcttaaatcagacgtgtactcattcggtg |
4635783 |
T |
|
| Q |
201 |
ttgtgcttcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatga |
300 |
Q |
| |
|
| ||||||||||||||||||||||| || || || |||||||| |||||||||||| | ||| ||| | | | |||||| ||| ||| ||| | || |
|
|
| T |
4635782 |
tggtgcttcttgaggtgttgtgtgctaggccacctttggttcgcgatttggataagaatacagctagtctagtttgttggttcaaaagatgctacgaaga |
4635683 |
T |
|
| Q |
301 |
aggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcat |
400 |
Q |
| |
|
|||||||| |||||| | |||||||| || ||| ||| |||||| || || | |||||||| ||| || ||| | ||| ||||||||||||||| |
|
|
| T |
4635682 |
aggtgtggcgattgaacaaatggtggatccattcctaagagattccatcacgggcgagtgttttgaatatttttgcaagttggcgttaagttgtttgcat |
4635583 |
T |
|
| Q |
401 |
gacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
480 |
Q |
| |
|
|| ||||||| ||||||| ||||||||| | || ||||| | |||||||||||| ||||| || | | |||||||||| |
|
|
| T |
4635582 |
gatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattagtggtgagtgagga |
4635503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 4642829 - 4642350
Alignment:
| Q |
1 |
tgacgtaaagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacc |
100 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||| |||||| | ||||||||||| || || |||||||| || ||||||||||| ||||| |||| ||| |
|
|
| T |
4642829 |
tgacgtgaagagcaccaacatattgttggatgaaaaatggatagctaaggtttccgacttcgggttatccaaggtgggacctacagggatatcgactacc |
4642730 |
T |
|
| Q |
101 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtg |
200 |
Q |
| |
|
|| ||||||| ||||||||||| || || |||||||| ||||| || ||||| ||| |||||| | |||||||| || ||||||||||| ||||||| |
|
|
| T |
4642729 |
cacatcagcacaatggtgaaaggaagccttgggtatttagatcctgagtactatatgttccaaaggctaactctaaaatcagatgtgtactcgttcggtg |
4642630 |
T |
|
| Q |
201 |
ttgtgcttcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatga |
300 |
Q |
| |
|
| || |||||||| ||||||||||| || || || ||||||||| |||||||||||| | || ||| | | | |||||| ||| ||| ||| | || |
|
|
| T |
4642629 |
tggtacttcttgaagtgttgtgtgctaggccacctttggttcgtaatttggataagaatactgctagtctagtttgttggttcaaaagatgctacgaaga |
4642530 |
T |
|
| Q |
301 |
aggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcat |
400 |
Q |
| |
|
|||||||| |||||| | || ||||| || ||| ||| |||||| || || | |||||||| ||| |||||| | ||| ||||||||||||||| |
|
|
| T |
4642529 |
aggtgtggcgattgaacaaatagtggatccattcctaagagattccatcacgggcgagtgtttagaatattattgcaagttggcgttaagttgtttgcat |
4642430 |
T |
|
| Q |
401 |
gacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
480 |
Q |
| |
|
|| ||||||| ||||||| ||||||||| | || ||||| | |||||||||||| ||||| |||| | |||||||||| |
|
|
| T |
4642429 |
gatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattggtggtgagtgagga |
4642350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 4671765 - 4671280
Alignment:
| Q |
1 |
tgacgtaaagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacc |
100 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||| | ||||||||||| || || |||||||| || |||||||| || ||||| | | ||| |
|
|
| T |
4671765 |
tgacgtgaagagcaccaacatattgttggatgagaaatggatagctaaggtttccgacttcgggttatccaaggtgggacccacggggataacaactacc |
4671666 |
T |
|
| Q |
101 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtg |
200 |
Q |
| |
|
|| |||||||| ||||||||||| || || |||||||| ||||| || ||||| ||| |||||| | |||||||| || ||||||||||| ||||||| |
|
|
| T |
4671665 |
cacgtcagcacaatggtgaaaggaagccttgggtatttagatcctgagtactatatgttccaaaggctaactctaaaatcagatgtgtactcattcggtg |
4671566 |
T |
|
| Q |
201 |
ttgtgcttcttgaggtgttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatga |
300 |
Q |
| |
|
| || |||||||| ||||||||||| || || || |||||||| |||||||||||| | ||| ||| | | | ||||||| ||| ||| ||| |||| |
|
|
| T |
4671565 |
tggtacttcttgaagtgttgtgtgctaggccacctttggttcgcgatttggataagaatacagctagtctagtttgttggtttaaaagatgctacgatga |
4671466 |
T |
|
| Q |
301 |
aggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcat |
400 |
Q |
| |
|
|||||||| |||||| | || |||| | ||| ||| |||||||| || ||||||||||| ||| |||||| | ||| || ||||| |||||| |
|
|
| T |
4671465 |
aggtgtggcgattgaacaaatactggattcattcctaagggattctatcacgggtgagtgtttggaatattattgcaagttggcgttgagttgcttgcat |
4671366 |
T |
|
| Q |
401 |
gacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatag |
486 |
Q |
| |
|
|| ||||||| ||||||| ||||||||| | || ||||| | ||||||||||| ||||| |||| | |||||||||| ||||| |
|
|
| T |
4671365 |
gatgatggaactcaacgaccctcaatgagtcaagtggttgggggtttagagtttgtgttgcaattggtggtgagtgaggaagatag |
4671280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 4847012 - 4847160
Alignment:
| Q |
1 |
tgacgtaaagagtacaaacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || ||||| |
|
|
| T |
4847012 |
tgacgttaagagtacaaacatattgttggatgaaaaatgggtggctaaggtttctgatttcgggttatcaaaagtgggaccaaccgggatatcaatgact |
4847111 |
T |
|
| Q |
101 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaat |
149 |
Q |
| |
|
||||| |||||||||||||| |||||| | || |||||||||||||||| |
|
|
| T |
4847112 |
catgtaagcactatggtgaagggtagtataggatatttggatccagaat |
4847160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 18926746 - 18927035
Alignment:
| Q |
17 |
aacatattgttggatgagaaatgggtggctaaggtttctgattttgggttatcaaaagtgggacctactgggatgtcgatgacccatgtcagcactatgg |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || || |||||||| || |||||||| || ||||| || | |||||||||||||| |||| |
|
|
| T |
18926746 |
aacatattattggatgagaaatgggtggctaaggtttccgacttcgggttatccaaggtgggaccaacggggatatcaactacccatgtcagcacaatgg |
18926845 |
T |
|
| Q |
117 |
tgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtgttgtgcttcttgaggt |
216 |
Q |
| |
|
|||| || ||||| |||||||| ||||| || ||||| |||| |||||| | || ||||| ||||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
18926846 |
tgaaggggagtcttgggtatttagatcctgagtactatatgctccaaaggcttaccctaaaatctgacgtgtactcattcggtgtggtgcttcttgaggt |
18926945 |
T |
|
| Q |
217 |
gttgtgtgcaagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgt |
306 |
Q |
| |
|
||||||||||| || || |||||||| ||| |||||||| | || ||| | | | ||||||||||| ||||||| |||||||||| |
|
|
| T |
18926946 |
attgtgtgcaaggccacctttggttcgcgatttagataagaagacggctagtctagtttgttggtttcaaagatgttacgatgaaggtgt |
18927035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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