View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15080_high_16 (Length: 260)
Name: NF15080_high_16
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 41084908 - 41085141
Alignment:
| Q |
18 |
atagagataaaaagagagagaggggtaaggtgaaatcaccaaaatagccataatgacacgtggggtgtatattgggtgtttgaaaaaaggatgtctatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41084908 |
atagagataaaaagagagagaggggtaaggtgaaatcaccaaaatagccctaatgacacgtggggtgtatattgggggtttgaaaaaaggatgtctatga |
41085007 |
T |
|
| Q |
118 |
attcataatggccaagattgcttttgatacgaagtgtaaatatgaca------gggggaacgtacttaacaccaattttgtgagaagcttgaggttgtcg |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41085008 |
attcataatggccacgattgcttttgatacgaagtgtaaatatgacaaattttgggggaacgtacttaacaccaattttgtgagaagcttgaggttgtcg |
41085107 |
T |
|
| Q |
212 |
ctatgtacgtcccaaccattttcaccgtggaaat |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41085108 |
ctatgtacgtcccaaccattttcaccgtggaaat |
41085141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University