View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15080_high_2 (Length: 514)
Name: NF15080_high_2
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 12 - 499
Target Start/End: Complemental strand, 39996796 - 39996309
Alignment:
| Q |
12 |
atgaaacactttgaccttgaacacggtacattactgacaaaaatccctagagttctagccttagaacaatatgaatatgatatgatagattatattttac |
111 |
Q |
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| T |
39996796 |
atgaaacactttgaccttggacacggtacattactgacaaaaatccctagagttctagccttagaacaatatgaatatgatatgatagattattttttac |
39996697 |
T |
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| Q |
112 |
tcttattaatctgaaaattaagctattttctactttcgtagttggccaagtccattgattgttggctaagtcatagctaataaattttaggttgggtggg |
211 |
Q |
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| T |
39996696 |
tcttattaatctgaaaattaagctattttctactttcgtagttggccaaatccattgattgttggctaagtcattgctaacaaattttaggttgggtggg |
39996597 |
T |
|
| Q |
212 |
ttgggttcaagcgatttaatccttaaattttgtcaacaatccaaattttatatacaagactaattgggggttgatttgttgtacttgtcctattttgaca |
311 |
Q |
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| T |
39996596 |
ttgggttcaagcgatttaatccttaaattttgtcaacaatccaaattttatatacaagactaattgggggttgatttgttgtacttgtcctattttgaca |
39996497 |
T |
|
| Q |
312 |
cccccaaatacttttatataatagagaggaattaatttcttcaaataatacaatttcagtcagaaccnnnnnnntacaatttcagtaacgagactattta |
411 |
Q |
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|||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |
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| T |
39996496 |
cccccaaagacttttatgttatagagaggaattaatttcttcaaataatacaatttcagtcagaaccaaaaaaatacaatttcagtaaggaggctattta |
39996397 |
T |
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| Q |
412 |
tggttgctctcatccnnnnnnnnnnnnnaaagtgtatcttttgtcaagataaaactcaacaatataaaattttaactagagaagatat |
499 |
Q |
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|||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39996396 |
tggtcgctctcatcctttttttatttttaacgtgtatcttttgtcaagataaaactcaacaatataaaattttaactagagaagatat |
39996309 |
T |
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