View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15080_high_20 (Length: 234)
Name: NF15080_high_20
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 42211636 - 42211435
Alignment:
| Q |
19 |
tgaatcccttcgaaactcaactcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211636 |
tgaatcccttcgaaactcaactcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaat |
42211537 |
T |
|
| Q |
119 |
ctacaacagttttgtgttgctaataatcagctaaatggaagcattcctcatggaatgaataagtttcaaaatctcatatccttctcttttgaacagaatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211536 |
ctacaacagttttgtgttgctaataatcagctaaatggaagcattcctcatggaatgaagaagtttcaaaatctcatatccttctcttttgaacagaatt |
42211437 |
T |
|
| Q |
219 |
at |
220 |
Q |
| |
|
|| |
|
|
| T |
42211436 |
at |
42211435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 42223848 - 42223651
Alignment:
| Q |
23 |
tcccttcgaaactcaactcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctac |
122 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42223848 |
tcccttcgaaactcaactcagttacaaattcttatggtcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctac |
42223749 |
T |
|
| Q |
123 |
aacagttttgtgttgctaataatcagctaaatggaagcattcctcatggaatgaataagtttcaaaatctcatatccttctcttttgaacagaattat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42223748 |
aacagttttgtgttgctaataatcagctaaatggaagcattcctcatggaatgaagaagtttcaaaatctcatatccttctcttttgaacagaattat |
42223651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 199
Target Start/End: Complemental strand, 42199053 - 42198885
Alignment:
| Q |
31 |
aaactcaactcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttt |
130 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||| ||| ||||| ||||| | | |||||||||||||||| |
|
|
| T |
42199053 |
aaactcaactcagttgcaagttcttatggtcaattataacaacttgactggggaacttccaaattctgttgaatatctgtgaggcaatctacaacagttc |
42198954 |
T |
|
| Q |
131 |
tgtgttgctaataatcagctaaatggaagcattcctcatggaatgaataagtttcaaaatctcatatcc |
199 |
Q |
| |
|
||||||||| |||||||||| | ||||||||||||||| |||||| | || ||||||||||||| |||| |
|
|
| T |
42198953 |
tgtgttgctcataatcagctgagtggaagcattcctcagggaatgcagaaatttcaaaatctcacatcc |
42198885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University