View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15080_high_23 (Length: 216)
Name: NF15080_high_23
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_high_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 1684617 - 1684806
Alignment:
| Q |
14 |
cacagacaataccaacaattaaagacctgccggtagtgccatgaaataccaacattgttatcagaacaatggcagcaaagaaaatggcctcaaggagaag |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1684617 |
cacaaacaataccaacaattaaagacctgccggtagtgccatgaaataccaacattgttatcagaacaatggcagcaaagaaaatagcctcaaggagaag |
1684716 |
T |
|
| Q |
114 |
ccaaaaccccatatccttctgaaattagag--nnnnnnngtagtgagtagcagaagaatataaatggttacattaacaagtgacaatatt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1684717 |
ccaaaaccccatatccttctgaaattagagaaaaaaaaagtagtgagtagcagaagaatataaatggttacattaacaagtgacaatatt |
1684806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 1695051 - 1695110
Alignment:
| Q |
25 |
ccaacaattaaagacctgccggtagtgccatgaaataccaacattgttatcagaacaatg |
84 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
1695051 |
ccaacaattaaagacctcttggtagtgccatgtaatgccaacattgttatcagaacaatg |
1695110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 1700179 - 1700245
Alignment:
| Q |
47 |
tagtgccatgaaataccaacattgttatcagaacaatggcagcaaagaaaatggcctcaaggagaag |
113 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||||||||| ||||||||||||| ||||| | |||||| |
|
|
| T |
1700179 |
tagtgccatgaagtgccaacattgttattagaacaatgacagcaaagaaaatagcctcgatgagaag |
1700245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University