View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15080_high_4 (Length: 440)
Name: NF15080_high_4
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 13 - 424
Target Start/End: Complemental strand, 35205630 - 35205219
Alignment:
| Q |
13 |
gtagcataggcggagaatgtggatggtgctcgtgctgtattagaatgctcgggtttgtcattggttattgggattttgcaatctgcaaattcgagtgcgg |
112 |
Q |
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| T |
35205630 |
gtagcattggcggagaatgtggatggtgctcgtgctgtattagaatgctcgggtttgtcattggttattgggattttgcaatctgcaaattcgcgtgcgg |
35205531 |
T |
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| Q |
113 |
agaaggagtactgtgtttccattttggtttcactatgtgttaatgttggtggagaggttgttagtgttttggcgaagcatgcttcggggattatgccttt |
212 |
Q |
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| T |
35205530 |
agaaggagtactgtgtttccattttggtttcactatgtgttaatgttggtggagaggttgttagtgttttggcgaagcatgcttcggggattatgccttt |
35205431 |
T |
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| Q |
213 |
gctttatgcaaatcttaccgatggtactcctcaagcggagaagaaagcgcggaaacttattaatgtcttgcaagaatttgatgagaagaggactttggga |
312 |
Q |
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| T |
35205430 |
gctttatgcaaatcttaccgatggtactcctcaagcggagaagaaagcgcggaaacttattaatgtcttgcaagaatttgatgagaagaggactttggga |
35205331 |
T |
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| Q |
313 |
atggtaggttcttctgttatgcagcaaagattgcttcagttgaattagttagttagaaccttcttccttttttctctttgtgaataaatatagaatcata |
412 |
Q |
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| T |
35205330 |
atggtaggttcttctgttatgcagcaaagattgcttcagttgaattagttagttagaaccttcttccttttttctctttgtgaataaatatagaatcata |
35205231 |
T |
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| Q |
413 |
catacatccaat |
424 |
Q |
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| T |
35205230 |
catacatccaat |
35205219 |
T |
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