View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15080_high_5 (Length: 431)
Name: NF15080_high_5
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 35406731 - 35406935
Alignment:
| Q |
23 |
attcaaggaagacaaagaagacaaacctccaaatctagttcaaagtacatgatttggttcatgatatatcttgctcgctatgttgcaaaagaggagtttg |
122 |
Q |
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| T |
35406731 |
attcaaggaagacgaagaagacaaacctccaaatctagttcaaagtacatgatttggtgcatgatatatcttgctctctatgttgcaaaagaggagtttg |
35406830 |
T |
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| Q |
123 |
tagcagttaaatcccattttcctagattacctgagcaagtaaagcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaag |
222 |
Q |
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| T |
35406831 |
tagcagttaaatcccattttcttagattacctgagcaagtaaagcatttatcaattgttgaaaatgtttcaatttcccattctttgttccccaagtcaag |
35406930 |
T |
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| Q |
223 |
gagtg |
227 |
Q |
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||||| |
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| T |
35406931 |
gagtg |
35406935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 220 - 422
Target Start/End: Original strand, 35406960 - 35407162
Alignment:
| Q |
220 |
aaggagtgagtcttgatagtgaaactcttttaaatacatgcaagttttagatttaagaaattctctgtttgagactctacttaattgatcaattgctaaa |
319 |
Q |
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| T |
35406960 |
aaggagtgagtcttgatagtgaaacttttttaaatacatgcaagttttagatttaagaaattctatgtttgagactctacttaattgatcaattgctaaa |
35407059 |
T |
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| Q |
320 |
ttagaatacttatgtgcaagnnnnnnnactcaatggatgcatggattggatattgaaacactgcctaaatggttaggcaagctgatcagccttcgagaat |
419 |
Q |
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| T |
35407060 |
ttagaatacttatgtggaagtttgtttactcaatggatgcatggattggatattgaaacactgcctaaatggttaggcaagctgatcagcctttgagaat |
35407159 |
T |
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| Q |
420 |
tat |
422 |
Q |
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||| |
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| T |
35407160 |
tat |
35407162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 18117366 - 18117202
Alignment:
| Q |
59 |
agttcaaagtacatgatttggttcatgatatatcttgctcgctatgttgcaaaagaggagtttgtagcagttaaatcccattttcctagattacctgagc |
158 |
Q |
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| T |
18117366 |
agttcaaagtacacgatttggtacatgat----cttgctttctatgttgcaaaaaaggagtttgtagtggttaaatcccacattcttagattacctgagc |
18117271 |
T |
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| Q |
159 |
aagtaaagcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaaggagtg |
227 |
Q |
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| T |
18117270 |
gagtaaagcatttatcaattgttgaaaatgtttcaatttgcgattctttgttccccaagtcaaggagtg |
18117202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 18132985 - 18132940
Alignment:
| Q |
372 |
ttgaaacactgcctaaatggttaggcaagctgatcagccttcgaga |
417 |
Q |
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| T |
18132985 |
ttgaaacactgcctaaagggttaggcaagctgatcagccttcgaga |
18132940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 18124932 - 18124860
Alignment:
| Q |
150 |
tacctgagcaagtaaagcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaag |
222 |
Q |
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||||||||||||| |||||||||||||||||||||| |||| || ||||| |||| |||||||||||||| |
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| T |
18124932 |
tacctgagcaagtgcgacatttatcaattgttgaaaatgattcacttggccatactttattccccaagtcaag |
18124860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 18116943 - 18116902
Alignment:
| Q |
372 |
ttgaaacactgcctaaatggttaggcaagctgatcagccttc |
413 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||| |
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| T |
18116943 |
ttgaaacattgcctaaagggttaggcaagctgatcagccttc |
18116902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 18117124 - 18117053
Alignment:
| Q |
251 |
aaatacatgcaagttttagatttaagaaattctctgtttgagactctacttaattgatcaattgctaaattagaa |
325 |
Q |
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|||||| ||| |||||||||||||||||||||| | | |||||||||| |||| |||||||||| ||||||| |
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| T |
18117124 |
aaatacttgcgagttttagatttaagaaattcttcgatcgagactctacctaat---tcaattgctacattagaa |
18117053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 36223683 - 36223736
Alignment:
| Q |
166 |
gcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtc |
219 |
Q |
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|||| |||||||||||||||||| |||| || ||||| ||||||||||||||| |
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| T |
36223683 |
gcatatatcaattgttgaaaatggttcacttggccatgatttgttccccaagtc |
36223736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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