View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15080_high_7 (Length: 363)
Name: NF15080_high_7
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 51254614 - 51254963
Alignment:
| Q |
14 |
aagtattcatagtttatatcataagtaatttaaaacagaaactttatttactgtttagtttatcaaaataaaaaattaaatttggtataatatgaaattg |
113 |
Q |
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| T |
51254614 |
aagtattcatagtttatatcataagtaatttaaaacagaaactttatttattgtttagtttatcaaaataaaaaattaaatttggtataatatgaaattg |
51254713 |
T |
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| Q |
114 |
atgtataacactaaataagttatagtattattannnnnnngaaggaaagttatagtatttatttattcgtcaaaagaagttatatttatttagattaaga |
213 |
Q |
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| T |
51254714 |
atgtataacattaaataagttatagtattattatttttttgaaggaaagttatagtatttatttattcgtcaaaagaagttatatttatttagattaaga |
51254813 |
T |
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| Q |
214 |
atattatcatcttttcaaataatatcatgttgttcctttccctttctatctgatcaaataagagaaaacacgtttacttttattcaaatgttttatcaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51254814 |
atattatcatcttttcaaataatatcatgttgttcctttccctttctatctgatcaaataagagaaaacacatttacttttattcaaatgttttatcaat |
51254913 |
T |
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| Q |
314 |
atatagagattgtatattctgatatttacaacatttcgtcctcttgccct |
363 |
Q |
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| T |
51254914 |
atatagagattgtatattctgatatttacaacatttcgtcctcttgccct |
51254963 |
T |
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