View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15080_low_10 (Length: 351)
Name: NF15080_low_10
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 1865694 - 1866032
Alignment:
| Q |
1 |
aagttcttctcctctcatgtttggtgctgatggaaaagttgcgggg-ttaatccaaatatcggagatgcatctgttacaccaatcactaatgttgaacct |
99 |
Q |
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| T |
1865694 |
aagttcttctcctctcatgtttggtgctgatggaaaagttgcgggggttaatccaaatatcggagatgcatatgttacaccaatcactaatgttgaacct |
1865793 |
T |
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| Q |
100 |
aactcacgttctatgaatggagcaattctggatcatacaaagacttcttctaatgaactattgtctagaaattttagctttccagaagagtcttctcatg |
199 |
Q |
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| T |
1865794 |
aactcacgttctgtgaatggagcaattctggatcatacaaagacttcttctaatgaactattgtctagaaattttagctttccagaagagtcttctcatg |
1865893 |
T |
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| Q |
200 |
cttctttgtttttaggtatgtattctctcttatgtttatgtggattaatgtgacccatttttcaattgttacatataaaaatgtattcttagttacaaag |
299 |
Q |
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| T |
1865894 |
cttctttgtttttaggtatgtattctctcttatgtttatgtggattaatgtgacccatttttcaattgttacatataaaaatgtattcttagttacaaag |
1865993 |
T |
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| Q |
300 |
tatagtttgaattaatcaatgcaggtagtagttcatctc |
338 |
Q |
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| T |
1865994 |
tatagtttgaattaatcaatgcaggtagtagttcatctc |
1866032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 1865442 - 1865510
Alignment:
| Q |
1 |
aagttcttctcctctcatgtttggtgctgatggaaaagttg-cggggttaatccaaatatcggagatgc |
68 |
Q |
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|||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||||||||| |
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| T |
1865442 |
aagttcttctcctctcatgtttggcattgatggaaaagctgtagaggttaatccaaatatcggagatgc |
1865510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35440956 - 35440916
Alignment:
| Q |
1 |
aagttcttctcctctcatgtttggtgctgatggaaaagttg |
41 |
Q |
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| T |
35440956 |
aagtttttctcctcacatgtttggtgctgatggaaaagttg |
35440916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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