View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15080_low_11 (Length: 350)
Name: NF15080_low_11
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_low_11 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 1606140 - 1606468
Alignment:
| Q |
1 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1606140 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacccagggggcttactaaagtgtccatgaaagttttcatcaccataac |
1606239 |
T |
|
| Q |
101 |
tctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaa |
200 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1606240 |
tcttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaa |
1606339 |
T |
|
| Q |
201 |
attccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606340 |
attccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaa |
1606439 |
T |
|
| Q |
301 |
ccactgcggcattgccaaagatgaagtct |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1606440 |
ccactgcggcattgccaaagatgaagtct |
1606468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 1629438 - 1629766
Alignment:
| Q |
1 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
1629438 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattac |
1629537 |
T |
|
| Q |
101 |
tctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaa |
200 |
Q |
| |
|
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1629538 |
tcttgaatattgttgccaaggtctgcccaagaaggttttgtacttgtcaacaacaggttttagatctgatgcagccctaatttgacaattgtggaatgaa |
1629637 |
T |
|
| Q |
201 |
attccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
1629638 |
attccagtgttttggaatgggtcacctcgaccttgggcagtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaata |
1629737 |
T |
|
| Q |
301 |
ccactgcggcattgccaaagatgaagtct |
329 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
1629738 |
ccactgcggcgttgccaaagatgaagtct |
1629766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 10821260 - 10820932
Alignment:
| Q |
1 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
10821260 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctgactaaagtgtccataaaagttttcatcaccataac |
10821161 |
T |
|
| Q |
101 |
tctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaa |
200 |
Q |
| |
|
||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
10821160 |
tcttgaatattgttgccaaggtcttcctaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaa |
10821061 |
T |
|
| Q |
201 |
attccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaa |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |
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|
| T |
10821060 |
attccagtgttttggaatggatcacctcgaccttgggcagtgatcatgttagcttggccatctaaaggttttcttgcgaaaatgttgcaattttggaata |
10820961 |
T |
|
| Q |
301 |
ccactgcggcattgccaaagatgaagtct |
329 |
Q |
| |
|
||||||| || |||||||||||||||||| |
|
|
| T |
10820960 |
ccactgcagcgttgccaaagatgaagtct |
10820932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 1623262 - 1623590
Alignment:
| Q |
1 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1623262 |
ctccataatacaatgtatcttgagcaaaatctgtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccataac |
1623361 |
T |
|
| Q |
101 |
tctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaa |
200 |
Q |
| |
|
||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1623362 |
tcttgagaattgttgccaaggccttcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaa |
1623461 |
T |
|
| Q |
201 |
attccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| | |
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|
| T |
1623462 |
attccagtgttttggaatgggtcaccacgaccttgggctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttttggaata |
1623561 |
T |
|
| Q |
301 |
ccactgcggcattgccaaagatgaagtct |
329 |
Q |
| |
|
| ||||| || |||||||||||||||||| |
|
|
| T |
1623562 |
ctactgcagcgttgccaaagatgaagtct |
1623590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 3 - 328
Target Start/End: Original strand, 18780958 - 18781283
Alignment:
| Q |
3 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18780958 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccataactc |
18781057 |
T |
|
| Q |
103 |
tcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaaat |
202 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
18781058 |
ttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccataatttgacaattgtggaatgaaat |
18781157 |
T |
|
| Q |
203 |
tccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaacc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
18781158 |
tccagtgttttggaatgggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaacact |
18781257 |
T |
|
| Q |
303 |
actgcggcattgccaaagatgaagtc |
328 |
Q |
| |
|
|||||||| ||||||||||| ||||| |
|
|
| T |
18781258 |
actgcggcgttgccaaagataaagtc |
18781283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 12802541 - 12802849
Alignment:
| Q |
20 |
ttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactctcgaatattgttgccaa |
119 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||| | || || || ||| | |||||||| | |||||| |||| |||||| || ||| |||||| |
|
|
| T |
12802541 |
ttgagcaaaattagtacctccccatggagaccaacccattggactgaccaaattatccatgaatgatttcatgaccacaactctagagtatctttgccag |
12802640 |
T |
|
| Q |
120 |
ggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatg |
219 |
Q |
| |
|
|||| ||||||||||| ||| | || | ||||| ||||| | ||| | || |||||||| ||| | ||||| | ||||||||||||||||| |||| |
|
|
| T |
12802641 |
ggccggcccaagaaggtgttgaatttcccgacaacgggcttgaaatctggcgcggccctaatctgagagttgtgaatcgaaattccagtgttttgaaatg |
12802740 |
T |
|
| Q |
220 |
ggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaa |
319 |
Q |
| |
|
||||| | ||||||||||| ||||||||||| ||||| || | |||||| |||| | | ||| | || ||||||||||| || || || |||||||| |
|
|
| T |
12802741 |
ggtcatcacgaccttgggccgtgatcatgtttgcttggccgtttaaaggccttctaacaagaatcatgcagttttggaaaactacggctgcgttgccaaa |
12802840 |
T |
|
| Q |
320 |
gatgaagtc |
328 |
Q |
| |
|
||||||||| |
|
|
| T |
12802841 |
gatgaagtc |
12802849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 8767130 - 8767075
Alignment:
| Q |
270 |
tttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| || ||||||||||| |
|
|
| T |
8767130 |
tttcttgcgaaaatgttacaattttgcaaaactaccgcggcgttaccaaagatgaa |
8767075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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