View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15080_low_14 (Length: 274)
Name: NF15080_low_14
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 48 - 263
Target Start/End: Original strand, 24045173 - 24045395
Alignment:
| Q |
48 |
agtacctgtttggatacgcgttttctgacccccaaaagcgagtttagagattcaaaagcgatttcaccatttt--ttaagatgtttgggtaactgcaaaa |
145 |
Q |
| |
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||||||||||||| || |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24045173 |
agtacctgtttgggtatgcgttttccgacccc-aaaagcgagtttagagattcaaaagcgatttcaccattttttttaagatgtttgggtaactgcaaaa |
24045271 |
T |
|
| Q |
146 |
gcgcttcaatcagtcctgattctagctccaaacccatgtttcctcaaagccataaattggagct------cctgttaaaatcaattctgcaaaagcccca |
239 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24045272 |
gcgcttcaatcagtcgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgttaaaatcaattctgcaaaagcccca |
24045371 |
T |
|
| Q |
240 |
aatttgtttccagctttacccttt |
263 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
24045372 |
aatttgtttccagctttacccttt |
24045395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 45 - 262
Target Start/End: Original strand, 36547533 - 36547755
Alignment:
| Q |
45 |
cttagtacctgtttggatacgcgttttctgacccccaaaagcgagtttagagattcaaaagcgatttcaccattttttaagatgtttgggtaactgcaaa |
144 |
Q |
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||||| |||||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36547533 |
cttagcacctgtttggatacgcgttttccaatccc-aaaagcgagtttagagattcaaaagccatttcaccattttttaagatgtttgggtaactgcaaa |
36547631 |
T |
|
| Q |
145 |
agcgcttcaatcagtcctgattctagctccaaacccatgtttcctcaaagccataaattggagct------cctgttaaaatcaattctgcaaaagcccc |
238 |
Q |
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|
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
36547632 |
agcgcttcaatcagccgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgctaaaatcaattctgcaaaagcccc |
36547731 |
T |
|
| Q |
239 |
aaatttgtttccagctttaccctt |
262 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
36547732 |
aaatttgtttccagctttaccctt |
36547755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 49 - 263
Target Start/End: Complemental strand, 2175800 - 2175581
Alignment:
| Q |
49 |
gtacctgtttggatacgcgttttctgacccccaaaagcgagtttagagattcaaaagcgatttcaccattttttaagatgtttgggtaactgcaaaagcg |
148 |
Q |
| |
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|||||||||||||||||||||||| |||| |||| | |||| |||| |||||| || |||||||||||||||||||||||||| |||||||||||||| |
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| T |
2175800 |
gtacctgtttggatacgcgttttcc-accctcaaacgtgagtctagatgttcaaacgccatttcaccattttttaagatgtttggataactgcaaaagcg |
2175702 |
T |
|
| Q |
149 |
cttcaatcagtcctgattctagctccaaacccatgtttcctcaaagccataaattggagct------cctgttaaaatcaattctgcaaaagccccaaat |
242 |
Q |
| |
|
|||| | || | ||| |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2175701 |
cttctaccaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaat |
2175602 |
T |
|
| Q |
243 |
ttgtttccagctttacccttt |
263 |
Q |
| |
|
|| |||||||||||||||||| |
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| T |
2175601 |
ttatttccagctttacccttt |
2175581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 49 - 263
Target Start/End: Complemental strand, 47218279 - 47218060
Alignment:
| Q |
49 |
gtacctgtttggatacgcgttttctgacccccaaaagcgagtttagagattcaaaagcgatttcaccattttttaagatgtttgggtaactgcaaaagcg |
148 |
Q |
| |
|
||||||||||||||||||||||| | | || |||| | |||| |||| |||||| || |||||||||||||| |||||||||||||||||||||||| | |
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| T |
47218279 |
gtacctgtttggatacgcgtttt-tcagcctcaaacgtgagtctagatgttcaaatgccatttcaccatttttgaagatgtttgggtaactgcaaaagtg |
47218181 |
T |
|
| Q |
149 |
cttcaatcagtcctgattctagctccaaacccatgtttcctcaaagccataaattggagct------cctgttaaaatcaattctgcaaaagccccaaat |
242 |
Q |
| |
|
|||| | || | ||| |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47218180 |
cttctaccaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaat |
47218081 |
T |
|
| Q |
243 |
ttgtttccagctttacccttt |
263 |
Q |
| |
|
|| |||||||||||||||||| |
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| T |
47218080 |
ttatttccagctttacccttt |
47218060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 24771483 - 24771439
Alignment:
| Q |
214 |
ttaaaatcaattctgcaaaagccccaaatttgtttccagctttac |
258 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||||||||||| |
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|
| T |
24771483 |
ttaaaatcaattctgcataaaccccaaattaatttccagctttac |
24771439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 49 - 263
Target Start/End: Complemental strand, 20830833 - 20830616
Alignment:
| Q |
49 |
gtacctgtttggatacgcgttttctgacccccaaaagcgagtttagagattcaaaagcgatttcaccattttttaagatgtttgggtaactgcaaaagcg |
148 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| |||||| |||| |||||| | |||||||||||||| ||| ||||||||||||||||||||| |
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| T |
20830833 |
gtacctgtttggatacgcgttttcc-agcctcaaacgcgagtctagatgttcaaacaccatttcaccatttttgaag--gtttgggtaactgcaaaagcg |
20830737 |
T |
|
| Q |
149 |
cttcaatcagtcctgattctagctccaaacccatgtttcctcaaagccataaattggagct------cctgttaaaatcaattctgcaaaagccccaaat |
242 |
Q |
| |
|
|||| | || | ||| |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
20830736 |
cttctaccaaacgtgaatctagctccaaacccacctttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagcctcaaat |
20830637 |
T |
|
| Q |
243 |
ttgtttccagctttacccttt |
263 |
Q |
| |
|
|| |||||||||||||||||| |
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|
| T |
20830636 |
ttatttccagctttacccttt |
20830616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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