View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15080_low_15 (Length: 267)

Name: NF15080_low_15
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15080_low_15
NF15080_low_15
[»] scaffold0536 (4 HSPs)
scaffold0536 (1-164)||(6287-6450)
scaffold0536 (1-164)||(10271-10432)
scaffold0536 (211-252)||(6497-6538)
scaffold0536 (38-120)||(1278-1360)
[»] chr4 (6 HSPs)
chr4 (1-164)||(48912121-48912284)
chr4 (3-164)||(48958384-48958545)
chr4 (7-164)||(48965566-48965723)
chr4 (127-161)||(48974349-48974383)
chr4 (211-252)||(48912331-48912372)
chr4 (211-252)||(48965478-48965519)
[»] chr6 (2 HSPs)
chr6 (1-164)||(12589945-12590108)
chr6 (1-164)||(12483240-12483403)
[»] chr2 (3 HSPs)
chr2 (6-164)||(13448600-13448758)
chr2 (5-81)||(13455154-13455230)
chr2 (211-239)||(13440362-13440390)
[»] chr7 (1 HSPs)
chr7 (51-163)||(3417356-3417468)
[»] chr5 (1 HSPs)
chr5 (51-164)||(28385571-28385684)


Alignment Details
Target: scaffold0536 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 6287 - 6450
Alignment:
Q  1 agtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6287 agtgttgtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 6386  T
Q  101 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6387 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 6450  T

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Target: scaffold0536; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 10271 - 10432
Alignment:
Q  1 agtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 100  Q
    ||||||||||||||||| |||||||||||||||||  ||| ||||| |||||  |||||||||||||| |||||||||||| ||||   |||  | ||||    
T  10271 agtgttgtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagata--tcagtgttgtacatttgctttggaagcctatgttatttttcagata 10368  T
Q  101 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 164  Q
    |||||||||| |||||||| ||  || |||||||||||||| || ||||  |||| ||||||||    
T  10369 aacaactttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagttgttcc 10432  T

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Target: scaffold0536; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 6497 - 6538
Alignment:
Q  211 tggttgccaaagggattcgaagagagaaatatcggaaagaag 252  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6497 tggttgccaaagggattcgaagagagaaatatcggaaagaag 6538  T

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Target: scaffold0536; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 1278 - 1360
Alignment:
Q  38 actcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgca 120  Q
    |||| |||| ||||||||||||  | |||||||||||||||| ||| |||  |||||| ||||||||| | || |||||||||    
T  1278 actcaaagcgagataactcagtactctacatatgctttggaaccttttgctatttccctgataaacaattgtatgagattgca 1360  T

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Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 48912121 - 48912284
Alignment:
Q  1 agtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 100  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| | ||||||||| ||| ||||||||||||||||||||  ||| | |||  ||||||    
T  48912121 agtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcggata 48912220  T
Q  101 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 164  Q
    |||||||||| |||||||| || ||||| ||||||||| ||||| |||||||||||||||||||    
T  48912221 aacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcc 48912284  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 48958545 - 48958384
Alignment:
Q  3 tgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaa 102  Q
    |||||| |||||||| |  ||||||||||||||  ||| ||||  | |||||||||||||||||||||||||||||||| ||||   |||  | ||||||    
T  48958545 tgttgttagtgtgcatggttgtctgagttggctcaacttgaagagacataactcagtgttgtacatatgctttggaagcatatgttatttatctgataaa 48958446  T
Q  103 caactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 164  Q
    |||||||| |||||||| ||||||||||||||||| |||||| ||||  |||||||||||||    
T  48958445 caactttatgagattgcgtgtgggatagaagcatcaggtcacgaatttgtatgggttgttcc 48958384  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 48965723 - 48965566
Alignment:
Q  7 gtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaac 106  Q
    ||||| ||||| |||||| ||||||||||  | || |||| | |||||||||||||||||||| ||||||||||| | || | ||  | ||||||||| |    
T  48965723 gtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagc 48965624  T
Q  107 tttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 164  Q
    |||| |||||||| ||||  |||||||||||||||||  | || ||||||||| ||||    
T  48965623 tttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattcc 48965566  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 48974383 - 48974349
Alignment:
Q  127 atagaagcatcgggtcacaaattcatatgggttgt 161  Q
    |||||||||||||||||| ||||||||||||||||    
T  48974383 atagaagcatcgggtcaccaattcatatgggttgt 48974349  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 48912331 - 48912372
Alignment:
Q  211 tggttgccaaagggattcgaagagagaaatatcggaaagaag 252  Q
    |||||||||||||| || |||||||||| |||||||||||||    
T  48912331 tggttgccaaaggggtttgaagagagaattatcggaaagaag 48912372  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 48965519 - 48965478
Alignment:
Q  211 tggttgccaaagggattcgaagagagaaatatcggaaagaag 252  Q
    ||||| ||||||||||||||||||||||| || |||||||||    
T  48965519 tggttaccaaagggattcgaagagagaaacattggaaagaag 48965478  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 12589945 - 12590108
Alignment:
Q  1 agtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 100  Q
    ||||||||||  ||||| |||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| ||| |||||  |||| | ||||    
T  12589945 agtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcagata 12590044  T
Q  101 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 164  Q
    |||||||||| |||||| | ||||| ||||||||||| || ||| ||||| |||||||| ||||    
T  12590045 aacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcc 12590108  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 12483240 - 12483403
Alignment:
Q  1 agtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 100  Q
    ||||||||||| ||||| |||||||  ||||||||| |||| |||| ||| || ||||||||||||||||||||||| ||| |||||  |||| | ||||    
T  12483240 agtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaatttctctgata 12483339  T
Q  101 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 164  Q
    |||| |||||||| ||| |||| || ||||||||||||||| | ||||||||||||||||||||    
T  12483340 aacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcc 12483403  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 164
Target Start/End: Complemental strand, 13448758 - 13448600
Alignment:
Q  6 tgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaa 105  Q
    ||||| |||||||||| | ||||||||||| || ||  ||  || ||||||||||||||||||||| ||||||||| |   |  |||  | |||||||||    
T  13448758 tgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaa 13448659  T
Q  106 ctttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 164  Q
    || |||||||| ||||||| |||||||||||| ||||||  ||||||||||||||||||    
T  13448658 ctatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcc 13448600  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 13455230 - 13455154
Alignment:
Q  5 ttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagc 81  Q
    |||||| ||| |||||||| ||||| ||||| ||||| |||  || ||||||||| ||||||||||| |||||||||    
T  13455230 ttgtgaatgtacacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagc 13455154  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 13440390 - 13440362
Alignment:
Q  211 tggttgccaaagggattcgaagagagaaa 239  Q
    |||||||||||||||||||||||||||||    
T  13440390 tggttgccaaagggattcgaagagagaaa 13440362  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 3417356 - 3417468
Alignment:
Q  51 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 150  Q
    ||||||||||||||||||||| ||||||||||||  |  |||| | ||||||||||| || ||||||||||  |  ||||||||||||||||||  ||||    
T  3417356 taactcagtgttgtacatatgttttggaagcttaaactatttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattc 3417455  T
Q  151 atatgggttgttc 163  Q
    |||||||||||||    
T  3417456 atatgggttgttc 3417468  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 28385684 - 28385571
Alignment:
Q  51 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 150  Q
    |||||||||  |||||||||| ||||||||| ||  || |||| | ||||||||||| || ||||||||||| |   |||||||||| ||||||  ||||    
T  28385684 taactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattc 28385585  T
Q  151 atatgggttgttcc 164  Q
    ||||||||||||||    
T  28385584 atatgggttgttcc 28385571  T

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