View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15080_low_16 (Length: 263)
Name: NF15080_low_16
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 51416613 - 51416807
Alignment:
| Q |
48 |
atgaatggaggcgcgtaaagatgacgagggagagggcggaggagcagaaagagtttcatgttgaccaggcggcagaggagttcacagagatggttggatc |
147 |
Q |
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| T |
51416613 |
atgaatggaggcgcgtaaagatgacgagggagagggcggaggagcagaaagactttcatgttgaccaggcggcagaggagttcacagagatggttggatc |
51416712 |
T |
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| Q |
148 |
atcatcattgttaatgctgattgagtgagatagcacatcatgtgcatgtcgcaggtgaatcatattattcaagatcagatatctgtagttgttgt |
242 |
Q |
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| T |
51416713 |
atcatcattgttaatgctgattgagtgagatagcacatcatgtgcatgtagcaggtgaatcatattattcaagatcagatatctgtagttgttgt |
51416807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 51413628 - 51413666
Alignment:
| Q |
93 |
agaaagagtttcatgttgaccaggcggcagaggagttca |
131 |
Q |
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| T |
51413628 |
agaaagagtttcatgttgaccaggcggcggaagagttca |
51413666 |
T |
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