View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15080_low_23 (Length: 221)
Name: NF15080_low_23
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_low_23 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] scaffold0536 (3 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 48911919 - 48912125
Alignment:
| Q |
15 |
gaagcagctgagtaaattgttggaagcgcttcttgagacagttttcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtat |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48911919 |
gaagcagctgagtaaattattggaagcgcttcttgagacagttttcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtat |
48912018 |
T |
|
| Q |
115 |
atcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattcaagagaaagcacagagaggagaag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
48912019 |
atcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcagaactattcaagagaaggctgagagaggagaag |
48912118 |
T |
|
| Q |
215 |
agagtgt |
221 |
Q |
| |
|
||||||| |
|
|
| T |
48912119 |
agagtgt |
48912125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 48962834 - 48962710
Alignment:
| Q |
77 |
ttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttat |
176 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||| |||||||||||||||||||| || ||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
48962834 |
ttgtcaacaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtccagtttctcttat |
48962735 |
T |
|
| Q |
177 |
tcgcacaactattcaagagaaagca |
201 |
Q |
| |
|
||||| | | |||||||||||||| |
|
|
| T |
48962734 |
tcgcaaatccgttcaagagaaagca |
48962710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 48965887 - 48965726
Alignment:
| Q |
59 |
tcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatct |
158 |
Q |
| |
|
|||||||||| ||| || ||||||||||||| ||||| |||||||| |||||||| || || | || | || | || |||| || ||||||||||| |
|
|
| T |
48965887 |
tcaaaagtaatggactcattgtcaacaatttcgctgagcttgacggggaagagtacattaaatattatgtgagtagcacgggtcataaggcttggcatct |
48965788 |
T |
|
| Q |
159 |
tggtccagcttctcttattcgcacaactattcaagagaaagcacagagaggagaagagagtg |
220 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||||||||| |||| ||| ||||||||| |
|
|
| T |
48965787 |
tggtccagcttctcttattcgtaaaactgttcaagagaaagcagagaggggacaagagagtg |
48965726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 93 - 198
Target Start/End: Complemental strand, 48958671 - 48958566
Alignment:
| Q |
93 |
tgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattcaa |
192 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |||||| || ||||||| | ||||||||||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
48958671 |
tgaacttgatggtgaagagtgcatcgaacactacaagaaaatcacgggtcacaaggtttggcatcttggtcctgcttctcttattcgccaaaccattcaa |
48958572 |
T |
|
| Q |
193 |
gagaaa |
198 |
Q |
| |
|
|||||| |
|
|
| T |
48958571 |
gagaaa |
48958566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 48951727 - 48951640
Alignment:
| Q |
124 |
tacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattcaagagaaagcacagagaggag |
211 |
Q |
| |
|
||||||||||| | ||||||| ||||||||||||||||| || |||||| |||||| ||||| ||||||||| ||| | ||||||| |
|
|
| T |
48951727 |
tacgagaaaaccatcggtcacaaggcttggcatcttggtccggcctctcttgttcgcaaaactactcaagagaaggcaaatagaggag |
48951640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 6085 - 6276
Alignment:
| Q |
15 |
gaagcagctgagtaaattgttggaagcgcttcttgagacagttttcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtat |
114 |
Q |
| |
|
||||||| ||||| | || |||||||||||| | ||||| ||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
6085 |
gaagcagatgagtgacttattggaagcgcttttggagacggttttcaaaagcaacggaatcattgttaacaatttttctgaacttgacggtgaagagtac |
6184 |
T |
|
| Q |
115 |
atcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattcaagagaaagcacagag |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |||| ||||||| ||||||||||| |
|
|
| T |
6185 |
atcgaacactacgagaaaactacaggtcacaaagcttggcatcttggtccggcttctcttattcgtagaactgttcaagaaaaagcacagag |
6276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 10109 - 10275
Alignment:
| Q |
55 |
gttttcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggc |
154 |
Q |
| |
|
|||||||||||| | || ||||||||||| ||||||| |||||||||||| || || | |||||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
10109 |
gttttcaaaagtcaagggatccttgtcaataattttgtagaacttgacggtaaatagcacatcgaacactacaagaaaactacgggtcagaaagcttggc |
10208 |
T |
|
| Q |
155 |
atcttggtccagcttctcttattcgcacaactattcaagagaaagcacagagaggagaagagagtgt |
221 |
Q |
| |
|
||||| ||||||||| |||| |||| | |||| ||||||||||| || ||||||||||| ||||||| |
|
|
| T |
10209 |
atcttagtccagcttatcttgttcgtagaactgttcaagagaaaacagagagaggagaacagagtgt |
10275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 1164 - 1242
Alignment:
| Q |
140 |
gtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattcaagagaaagcacagagaggagaagagag |
218 |
Q |
| |
|
||||||| ||||||| |||||| ||||| |||||| |||||| ||| | ||||||||||||| | || |||||| |||| |
|
|
| T |
1164 |
gtcacaaggcttggcttcttggcccagcatctcttgttcgcaaaaccactcaagagaaagcaaataggggagaaaagag |
1242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 12589787 - 12589929
Alignment:
| Q |
59 |
tcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatct |
158 |
Q |
| |
|
|||||||||| ||| || |||| ||||| || ||||||||||| || |||||| | || ||||||| |||||||| || ||||||| ||||||||||| |
|
|
| T |
12589787 |
tcaaaagtaatggactcattgttaacaacttcgctgaacttgatggccaagagtgtgtcaaacactatgagaaaaccacaggtcacaaggcttggcatct |
12589886 |
T |
|
| Q |
159 |
tggtccagcttctcttattcgcacaactattcaagagaaagca |
201 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
12589887 |
tggtccagcttctcttattcacaaaactgttcaagagaaagca |
12589929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 28385871 - 28385750
Alignment:
| Q |
80 |
tcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcg |
179 |
Q |
| |
|
||||||| |||| ||||||||| || ||||||| | || |||||||||||||||| || ||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
28385871 |
tcaacaactttgttgaacttgatggagaagagtgtgtcaaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcctttattcg |
28385772 |
T |
|
| Q |
180 |
cacaactattcaagagaaagca |
201 |
Q |
| |
|
| |||| |||||||||||||| |
|
|
| T |
28385771 |
taaaactgttcaagagaaagca |
28385750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 12541222 - 12541101
Alignment:
| Q |
80 |
tcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcg |
179 |
Q |
| |
|
||||||| |||| ||||||||| || ||||||| | || |||||||||||||||| || ||||||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
12541222 |
tcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattca |
12541123 |
T |
|
| Q |
180 |
cacaactattcaagagaaagca |
201 |
Q |
| |
|
| || ||||||||||||||| |
|
|
| T |
12541122 |
gaaaaacattcaagagaaagca |
12541101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 13440725 - 13440611
Alignment:
| Q |
92 |
ctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattca |
191 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||||| |||||||| || ||||||| | ||||||||| |||||| ||||||||||||| | ||| ||||| |
|
|
| T |
13440725 |
ctgaacttgacggagaagagtgcatccaacactatgagaaaaccacgggtcacaaggtttggcatctcggtccaacttctcttattcgtaaaaccattca |
13440626 |
T |
|
| Q |
192 |
agagaaagcacagag |
206 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
13440625 |
agagaaagcagagag |
13440611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 198
Target Start/End: Complemental strand, 13448887 - 13448782
Alignment:
| Q |
93 |
tgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattcaa |
192 |
Q |
| |
|
||||||||| || ||||||| || |||||||||||||| | || ||||||| | |||||||||||||||| ||||||||||||||| |||| |||| |
|
|
| T |
13448887 |
tgaacttgatggagaagagtgcatacaacactacgagaaagccacgggtcacaaggtttggcatcttggtccaacttctcttattcgcaaaactgctcaa |
13448788 |
T |
|
| Q |
193 |
gagaaa |
198 |
Q |
| |
|
|||||| |
|
|
| T |
13448787 |
gagaaa |
13448782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 13455358 - 13455257
Alignment:
| Q |
93 |
tgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattcaa |
192 |
Q |
| |
|
|||| |||| || ||||||| ||| |||||||||| ||||| || ||||||| | ||||||| |||||||| ||||||||||| ||| ||| ||||| |
|
|
| T |
13455358 |
tgaatttgatggagaagagtgcatccaacactacgaaaaaacaacaggtcacaaggtttggcatattggtccaacttctcttatttgcagaaccgttcaa |
13455259 |
T |
|
| Q |
193 |
ga |
194 |
Q |
| |
|
|| |
|
|
| T |
13455258 |
ga |
13455257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 12641122 - 12641238
Alignment:
| Q |
82 |
aacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgca |
181 |
Q |
| |
|
||||| |||| ||||||||| |||||||| | ||| ||||||| |||||||| | || |||| |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
12641122 |
aacaactttgttgaacttgatggtgaagattgcatcaaacactatgagaaaaccatgggttacaaggcttggcatcttggtccaacttgtcttattcgca |
12641221 |
T |
|
| Q |
182 |
caactattcaagagaaa |
198 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
12641222 |
aaacttttgaagagaaa |
12641238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University