View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15080_low_3 (Length: 443)
Name: NF15080_low_3
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 33710347 - 33709912
Alignment:
| Q |
1 |
aacatttacattatttggaggtgttgagttttttcaattttagctttttgaagtagtggctggacaattgtaagccaggaattgtaggacattttgtgta |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33710347 |
aacatttacattatatggaggtgttgagttttttcaattttagctttttggagtagtggcagaacaattgtaagccaggaattgtaggacattttgtgta |
33710248 |
T |
|
| Q |
101 |
ttgatatagaaagtggacaggatgagagaattgcatttgattgtgaactaacttttaatggtt------tggtatcgtcataaaggataggccatataaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
33710247 |
ttgatatagaaagtggacaggatgagagaattgcatttgattatgagctaacttttaatggttggtaattggtatcgtcagaaaggataggccatataaa |
33710148 |
T |
|
| Q |
195 |
atctaaacttgtatgttatagttataatgagaacatgttactctaaaaataactatatatcatctcacaactgaaaaattatgaatcattcaatggcttg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33710147 |
atctaaacttgtatgttatagttataatgagaacatgtcactctaaaaataaccatatatcatctcacaactgaaaaattatgaatcattcaatggcttg |
33710048 |
T |
|
| Q |
295 |
gtaaattttccatgggtacctttgcatgtttgaggtacatgctcccaattgaaaggcactgcaacatgttctattattaatcaaacatcttctttttata |
394 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33710047 |
gtaaattttccatgggtacctttgcatctttgaggtacatgctcccaattgaagggcactgcaacatgttctattattaatcaaacatcttctttttata |
33709948 |
T |
|
| Q |
395 |
acttccaaagttctaaagcatactatgtacaaattg |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
33709947 |
acttccaaagttctaaagcatactatgtacaaattg |
33709912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 4907822 - 4907784
Alignment:
| Q |
327 |
aggtacatgctcccaattgaaaggcactgcaacatgttc |
365 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
4907822 |
aggtatatgctcccaattgaaaggcactgcaacaggttc |
4907784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University