View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15080_low_6 (Length: 396)
Name: NF15080_low_6
Description: NF15080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15080_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 50110411 - 50110043
Alignment:
| Q |
19 |
ggttctggcaaatatgcagcacattggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaattttggaatatttg |
118 |
Q |
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| T |
50110411 |
ggttctggcaaatatgcagcacattggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaattttggaatatttg |
50110312 |
T |
|
| Q |
119 |
gtgtgccaatggttggttcagatatatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttctatccattttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50110311 |
gtgtgccaatggttggttcagatatatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttctatccattttc |
50110212 |
T |
|
| Q |
219 |
aagggaccatgcaaactactactctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgaggtataagctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50110211 |
aagggaccatgcaaactactactctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgaggtataagctc |
50110112 |
T |
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| Q |
319 |
ctaccctatctgtacaccctaaactatgaggctcatattagtggatccccaattgctaggcctattttc |
387 |
Q |
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| T |
50110111 |
ctaccctatctgtacaccctaaactatgaggctcatattagtggagccccaattgctaggcctcttttc |
50110043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 166 - 387
Target Start/End: Complemental strand, 50120254 - 50120033
Alignment:
| Q |
166 |
actgaagagctttgcaataggtggattgaagttggtgctttctatccattttcaagggaccatgcaaactactactctcctagacaagaactttaccagt |
265 |
Q |
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| T |
50120254 |
actgaagagctttgtaataggtggattgaagttggtgctttctatcctttctcgagggatcattcaagtgtcatttcccctagacaagaactttaccaat |
50120155 |
T |
|
| Q |
266 |
gggagacggtagccgaatcagctagaaatgcattggggatgaggtataagctcctaccctatctgtacaccctaaactatgaggctcatattagtggatc |
365 |
Q |
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| T |
50120154 |
gggagtcagtagctgaatcagctagaaatgccttggggatgaggtataagcttctaccctatttttacacaataaactacgaggctcatattagtggagc |
50120055 |
T |
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| Q |
366 |
cccaattgctaggcctattttc |
387 |
Q |
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||||||||||||||| ||||| |
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| T |
50120054 |
tccaattgctaggcctcttttc |
50120033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 50120422 - 50120288
Alignment:
| Q |
25 |
ggcaaatatgcagcacattggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaattttggaatatttggtgtgc |
124 |
Q |
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||||||||||| || ||||||||||||||||| | || ||||||||| | || ||||| | |||||||| || || || |||||||||||||| ||| |
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| T |
50120422 |
ggcaaatatgctgctcattggacaggtgacaacaaaggaacatgggaggatttaagatatactatatctaccatcctcaactttggaatatttggcatgc |
50120323 |
T |
|
| Q |
125 |
caatggttggttcagatatatgtggtttctatcca |
159 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
50120322 |
caatggttggggcagatatatgtggtttctatcca |
50120288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 23934391 - 23934746
Alignment:
| Q |
19 |
ggttctggcaaatatgcagcacattggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaattttggaatatttg |
118 |
Q |
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||||| ||||||||||| ||||||||||| ||||||||||| || ||||||||||| || || || |||||||| || ||| ||||||| || ||||||| |
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| T |
23934391 |
ggttcgggcaaatatgctgcacattggaccggtgacaatcaaggaacatgggagaatttaaggtattcaatatccacaatgttgaatttcggtatatttg |
23934490 |
T |
|
| Q |
119 |
gtgtgccaatggttggttcagatatatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttctatccattttc |
218 |
Q |
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|||| |||||||||||||| || |||||||| || || |||||||| |||||||| || |||||||| ||||||||||||||||||||||| |||||||| |
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| T |
23934491 |
gtgttccaatggttggttctgacatatgtggattttacccacaaccaactgaagaactatgcaatagatggattgaagttggtgctttctacccattttc |
23934590 |
T |
|
| Q |
219 |
aagggaccatgcaaactactactctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgaggtataagctc |
318 |
Q |
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||| || ||||||||||||||||| || |||||||| |||||||| ||||| | ||||| ||||||| |||||||| || || || ||||| ||| | |
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| T |
23934591 |
aagagatcatgcaaactactactccccgagacaagagctttaccaatgggattcagtagctcaatcagcaagaaatgctttaggtataaggtacaagatt |
23934690 |
T |
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| Q |
319 |
ctaccctatctgtacaccctaaactatgaggctcatattagtggatccccaattgc |
374 |
Q |
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||||| ||||| |||||| |||||||||| |||||| |||||||||| |||||||| |
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| T |
23934691 |
ctaccgtatctttacaccttaaactatgaagctcatgttagtggatcaccaattgc |
23934746 |
T |
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