View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_high_1 (Length: 718)

Name: NF15081_high_1
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_high_1
NF15081_high_1
[»] chr1 (4 HSPs)
chr1 (16-708)||(48911394-48912088)
chr1 (574-632)||(4108632-4108690)
chr1 (410-443)||(11435795-11435828)
chr1 (412-477)||(40942419-40942483)
[»] chr7 (6 HSPs)
chr7 (70-146)||(13605925-13606001)
chr7 (647-704)||(35240593-35240650)
chr7 (646-705)||(1503284-1503343)
chr7 (574-625)||(26048890-26048941)
chr7 (647-701)||(32838202-32838256)
chr7 (408-454)||(43911102-43911148)
[»] chr5 (6 HSPs)
chr5 (577-625)||(29372226-29372274)
chr5 (577-625)||(7509677-7509725)
chr5 (419-477)||(31408746-31408803)
chr5 (574-632)||(18924402-18924460)
chr5 (413-477)||(2942068-2942131)
chr5 (412-476)||(39575211-39575274)
[»] chr4 (3 HSPs)
chr4 (387-477)||(2103176-2103265)
chr4 (419-477)||(22431463-22431520)
chr4 (387-477)||(39276512-39276601)
[»] chr3 (5 HSPs)
chr3 (574-632)||(27948425-27948483)
chr3 (577-625)||(21980651-21980699)
chr3 (577-625)||(22003082-22003130)
chr3 (648-705)||(21980566-21980623)
chr3 (648-705)||(22002997-22003054)
[»] chr8 (2 HSPs)
chr8 (647-706)||(14109669-14109728)
chr8 (647-704)||(35971967-35972024)
[»] chr2 (2 HSPs)
chr2 (647-705)||(8962212-8962270)
chr2 (574-632)||(2280112-2280170)
[»] chr6 (1 HSPs)
chr6 (411-452)||(7903053-7903094)


Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 16 - 708
Target Start/End: Original strand, 48911394 - 48912088
Alignment:
Q  16 atatcaagtcggttagctgtgtgttacatacttgtagctctttaatcctcttaactcttaagttgtgcttcttctcctgcatcagatattgcaagtgatg 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48911394 atatcaagtcggttagctgtgtgttacatacttgtagttctttaatcctcttaactcttaagttgtgcttcttctcctgcatcagatattgcaagcgatg 48911493  T
Q  116 caaccaatgcatcaaactgcagaagaaacaacatataaatagctcaaaggacagctcatgagtggtctattaatattgttgaaatatagaagacagaaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48911494 caaccaatgcatcaaactgcagaagaaacaacatataaatagctcaaaggacagctcatgaatggtctattaatattgttgaaatatagaagacagaaag 48911593  T
Q  216 catgatgcatatgtccaatattactataaaatttcaaaactaacagtgtgctatagttatcctccaagagaatcgccataactaagactctttttggtnn 315  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||      
T  48911594 catgatgactatgtccaatattactataaaatttcaaaactaacagtgtgctatagttatcctccaagagaatcac-ataactaagactctttttggtaa 48911692  T
Q  316 nnnnnnnn--taaagatgacggataaagtagctaataataggtgaacttgcgaataacatataggatagccaatagctaatagcatataagcgggatgat 413  Q
              |||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  48911693 aaaaaaaaaataaagatgacggataaagtagctaataataggcgaacttgcgagtaacatataagatagccaatagctaatagcatataagcgggatgat 48911792  T
Q  414 tgaatttgaagtatttggtaaaattaatggatgaactaactaagtaaatataaaatgacataaagtaatttttaagtagtatttaaattttttcatttaa 513  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48911793 tgaatttgaagtatttggtaaaattaatggatgaactaacta-gtaaatataaaatgacataaagtaatttttaagtagtatttaaattttttcatttaa 48911891  T
Q  514 gataatgaagataaaaaataatatactacaagctcaaactctacttagcatctcaaaatatatagtaagatcaatgttcttcattaatctaatggtgaca 613  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48911892 gataatgaagattaaaaatattatactacaagctcaaactctacttagcatctcaaaatatatagtaagatcaatgttcttcatcaatctaatggtgaca 48911991  T
Q  614 aatgtcatttttattatac--nnnnnnnntcaccattttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcctatg 708  Q
    |||||||||||| ||||||          ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48911992 aatgtcatttttgttatacaaaaaaaaaatcaccattttttaatgtctcctacagtaggagacctattctcgtctcctaccggaaacggcgcctatg 48912088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 574 - 632
Target Start/End: Original strand, 4108632 - 4108690
Alignment:
Q  574 tatagtaagatcaatgttcttcattaatctaatggtgacaaatgtcatttttattatac 632  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||||| ||||||    
T  4108632 tatagtaagatcaatgttcttcatcaatctaacggtgacaagtgtcatttttgttatac 4108690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 443
Target Start/End: Original strand, 11435795 - 11435828
Alignment:
Q  410 tgattgaatttgaagtatttggtaaaattaatgg 443  Q
    |||||||||||| |||||||||||||||||||||    
T  11435795 tgattgaatttgtagtatttggtaaaattaatgg 11435828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 477
Target Start/End: Complemental strand, 40942483 - 40942419
Alignment:
Q  412 attgaatttgaagtatttggtaaaattaatggatgaactaactaagtaaatataaaatgacataaa 477  Q
    |||||||||||| | |||||||||||||  || |||||||||| |  |||||||||||||||||||    
T  40942483 attgaatttgaattgtttggtaaaattagcggttgaactaactga-caaatataaaatgacataaa 40942419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 13606001 - 13605925
Alignment:
Q  70 ctcttaagttgtgcttcttctcctgcatcagatattgcaagtgatgcaaccaatgcatcaaactgcagaagaaacaa 146  Q
    |||||||||||||||||||| ||||  |||||||||| |||||||||||||| |  |||||||||||| ||||||||    
T  13606001 ctcttaagttgtgcttcttcacctgtctcagatattggaagtgatgcaaccagtaaatcaaactgcagcagaaacaa 13605925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 647 - 704
Target Start/End: Complemental strand, 35240650 - 35240593
Alignment:
Q  647 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcc 704  Q
    ||||||||||||| |||  ||||||||| |||||  ||||||||||||||||||||||    
T  35240650 ttttttaatgtcttctaccgtaggagacatattcaagtctcctaccggaaacggcgcc 35240593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 646 - 705
Target Start/End: Original strand, 1503284 - 1503343
Alignment:
Q  646 attttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcct 705  Q
    ||||||||||||||||||  || ||||||||||||  ||||||||||  |||||||||||    
T  1503284 attttttaatgtctcctactgtgggagacctattcaagtctcctaccataaacggcgcct 1503343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 625
Target Start/End: Complemental strand, 26048941 - 26048890
Alignment:
Q  574 tatagtaagatcaatgttcttcattaatctaatggtgacaaatgtcattttt 625  Q
    |||||||||| ||||||||||||| |||||||| || ||| |||||||||||    
T  26048941 tatagtaagaccaatgttcttcatcaatctaatagtaacatatgtcattttt 26048890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 647 - 701
Target Start/End: Complemental strand, 32838256 - 32838202
Alignment:
Q  647 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggc 701  Q
    |||| ||||||||||||  |||||||||||||||  |||||||| ||||||||||    
T  32838256 ttttataatgtctcctaccgtaggagacctattcaagtctcctaacggaaacggc 32838202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 454
Target Start/End: Original strand, 43911102 - 43911148
Alignment:
Q  408 gatgattgaatttgaagtatttggtaaaattaatggatgaactaact 454  Q
    |||||||||||||| ||||||||||||||| | ||| ||||||||||    
T  43911102 gatgattgaatttgtagtatttggtaaaatcagtggttgaactaact 43911148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 577 - 625
Target Start/End: Original strand, 29372226 - 29372274
Alignment:
Q  577 agtaagatcaatgttcttcattaatctaatggtgacaaatgtcattttt 625  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29372226 agtaagatcaatgttcttcatcaatctaatggtgacaaatgtcattttt 29372274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 577 - 625
Target Start/End: Original strand, 7509677 - 7509725
Alignment:
Q  577 agtaagatcaatgttcttcattaatctaatggtgacaaatgtcattttt 625  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  7509677 agtaagatcagtgttcttcatcaatctaatggtgacaaatgtcattttt 7509725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 31408803 - 31408746
Alignment:
Q  419 ttgaagtatttggtaaaattaatggatgaactaactaagtaaatataaaatgacataaa 477  Q
    |||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||    
T  31408803 ttgaagtatttggtaaaattaacggttcaactaactaa-taaatataaaatgacataaa 31408746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 632
Target Start/End: Original strand, 18924402 - 18924460
Alignment:
Q  574 tatagtaagatcaatgttcttcattaatctaatggtgacaaatgtcatttttattatac 632  Q
    |||||||||||||||||||||||| |||  |||||||||| | ||||||||| ||||||    
T  18924402 tatagtaagatcaatgttcttcatcaattcaatggtgacacaagtcatttttgttatac 18924460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 477
Target Start/End: Complemental strand, 2942131 - 2942068
Alignment:
Q  413 ttgaatttgaagtatttggtaaaattaatggatgaactaactaagtaaatataaaatgacataaa 477  Q
    ||||||||| ||  ||||||||||||| ||| |||||||||| | ||||||||||||||||||||    
T  2942131 ttgaatttgtagggtttggtaaaattagtggttgaactaactta-taaatataaaatgacataaa 2942068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 476
Target Start/End: Complemental strand, 39575274 - 39575211
Alignment:
Q  412 attgaatttgaagtatttggtaaaattaatggatgaactaactaagtaaatataaaatgacataa 476  Q
    |||||||||||||| ||| ||||||||||  | |||||||||| |||||||||| ||||||||||    
T  39575274 attgaatttgaagtgtttagtaaaattaaaagttgaactaact-agtaaatatataatgacataa 39575211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 387 - 477
Target Start/End: Original strand, 2103176 - 2103265
Alignment:
Q  387 tagctaatagcatataagcgggatgattgaatttgaagtatttggtaaaattaatggatgaactaactaagtaaatataaaatgacataaa 477  Q
    ||||| |||||| ||||||  | | |||||||||| ||| ||||||||||||||||| ||||| |||| | ||||||||||||||||||||    
T  2103176 tagcttatagcagataagctagcttattgaatttgtagtgtttggtaaaattaatggttgaacaaactta-taaatataaaatgacataaa 2103265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 22431520 - 22431463
Alignment:
Q  419 ttgaagtatttggtaaaattaatggatgaactaactaagtaaatataaaatgacataaa 477  Q
    ||||||| ||||||||||||| ||| | |||||||| | ||||||||||||||||||||    
T  22431520 ttgaagtgtttggtaaaattagtggttcaactaactta-taaatataaaatgacataaa 22431463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 387 - 477
Target Start/End: Complemental strand, 39276601 - 39276512
Alignment:
Q  387 tagctaatagcatataagcgggatgattgaatttgaagtatttggtaaaattaatggatgaactaactaagtaaatataaaatgacataaa 477  Q
    ||||||||||| ||||| |  | |||||||||||| ||| ||||||||||||| ||| ||||||| || | ||||| | ||||||||||||    
T  39276601 tagctaatagcttataacctagctgattgaatttgtagtgtttggtaaaattagtggttgaactagctta-taaatcttaaatgacataaa 39276512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 632
Target Start/End: Complemental strand, 27948483 - 27948425
Alignment:
Q  574 tatagtaagatcaatgttcttcattaatctaatggtgacaaatgtcatttttattatac 632  Q
    |||||||||||||||||||||| | ||| ||| |||||||| |||||||||||||||||    
T  27948483 tatagtaagatcaatgttcttcgtcaatataacggtgacaagtgtcatttttattatac 27948425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 625
Target Start/End: Complemental strand, 21980699 - 21980651
Alignment:
Q  577 agtaagatcaatgttcttcattaatctaatggtgacaaatgtcattttt 625  Q
    ||||| |||| |||||||||| |||||||||||||||||||||||||||    
T  21980699 agtaaaatcagtgttcttcatcaatctaatggtgacaaatgtcattttt 21980651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 625
Target Start/End: Complemental strand, 22003130 - 22003082
Alignment:
Q  577 agtaagatcaatgttcttcattaatctaatggtgacaaatgtcattttt 625  Q
    ||||| |||| |||||||||| |||||||||||||||||||||||||||    
T  22003130 agtaaaatcagtgttcttcatcaatctaatggtgacaaatgtcattttt 22003082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Complemental strand, 21980623 - 21980566
Alignment:
Q  648 tttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcct 705  Q
    ||||||||||||||||| ||||||||||||||    |||||||||| ||| |||||||    
T  21980623 tttttaatgtctcctatcgtaggagacctatttaaatctcctaccgaaaatggcgcct 21980566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Complemental strand, 22003054 - 22002997
Alignment:
Q  648 tttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcct 705  Q
    ||||||||||||||||| ||||||||||||||    |||||||||| ||| |||||||    
T  22003054 tttttaatgtctcctatcgtaggagacctatttaaatctcctaccgaaaatggcgcct 22002997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 647 - 706
Target Start/End: Original strand, 14109669 - 14109728
Alignment:
Q  647 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgccta 706  Q
    |||||||||||||||||  |||||||||||||||  |||||||||| |||| ||||||||    
T  14109669 ttttttaatgtctcctactgtaggagacctattcaagtctcctaccagaaatggcgccta 14109728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 647 - 704
Target Start/End: Original strand, 35971967 - 35972024
Alignment:
Q  647 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcc 704  Q
    |||||||||||||||||  |||||||||||||||  ||||||||||  ||||||||||    
T  35971967 ttttttaatgtctcctaccgtaggagacctattcaagtctcctaccataaacggcgcc 35972024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 647 - 705
Target Start/End: Original strand, 8962212 - 8962270
Alignment:
Q  647 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcct 705  Q
    |||| |||||||||||| |||||||||||||||   ||||||||||||||||| |||||    
T  8962212 ttttataatgtctcctacagtaggagacctatttaagtctcctaccggaaacgacgcct 8962270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 632
Target Start/End: Original strand, 2280112 - 2280170
Alignment:
Q  574 tatagtaagatcaatgttcttcattaatctaatggtgacaaatgtcatttttattatac 632  Q
    |||||||||||||||||||||| | ||| ||| |||||||| | |||||||| ||||||    
T  2280112 tatagtaagatcaatgttcttcgtcaatataacggtgacaagtttcatttttgttatac 2280170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 452
Target Start/End: Complemental strand, 7903094 - 7903053
Alignment:
Q  411 gattgaatttgaagtatttggtaaaattaatggatgaactaa 452  Q
    ||||||||||||||| |||||||||||| |||| ||||||||    
T  7903094 gattgaatttgaagtgtttggtaaaatttatggttgaactaa 7903053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University