View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15081_high_13 (Length: 493)
Name: NF15081_high_13
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 478
Target Start/End: Complemental strand, 21621416 - 21620948
Alignment:
| Q |
10 |
attattcttcttaggatgaaaccttctttttattttatgtaaaccaattcaattcaatcaacatatttagaatataaatgggtcttttgacaaataataa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
21621416 |
attattcttcttaggatgaaaccttctttttattttatgtaaaccaattcaattcaatcagcatatttataatataaatgggtcttttgacaaaaaataa |
21621317 |
T |
|
| Q |
110 |
tgttttgtcgtatgattcatattttgactttaaattttaaacnnnnnnnna-aaatccaaaagttaatcaggtgactaaaatcgtatgattacatacatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21621316 |
tgttttgtcgtatgattcatattttgactttaaattttaaacttttttttttaaattcaaaagttaatcaggtgactaaaatcgtatgattacatacatg |
21621217 |
T |
|
| Q |
209 |
aatctacaagtatctcaaaagtgtcaagtttaaggtctatctatataaaactcatgtaggtatctatcttcatatcggttgactttgaaactccctattt |
308 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21621216 |
aatctacaagtatctcaaaagtgtcaattttagggtctatctatataaaactcatgtaagtatctatcttcatatcggttgactttgaaactccctattt |
21621117 |
T |
|
| Q |
309 |
tatcacannnnnnnnncattttgataaccaactaaacatggccaatcacaaacttgcattttctctctaaaagctttgaatgatctaaatgaaacacaca |
408 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21621116 |
tatcac-tttttttttcattttgataaccaactaaacatggccaatcacaaacttgcattttctctctaaaagctttgaatgatctaaatgaaacacaca |
21621018 |
T |
|
| Q |
409 |
ataatacatgcaaagacatgtgtacatcatgtgatactgtagattatatatgaaataattgtactcttat |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21621017 |
ataatacatgcaaagacatgtgtacatcatgtgatactgtagattatatatgaaataattgtactcttat |
21620948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University