View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_high_14 (Length: 478)
Name: NF15081_high_14
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 15 - 460
Target Start/End: Original strand, 27974625 - 27975070
Alignment:
| Q |
15 |
tattgggaaatcgaagatcagataacaggtatgcagaaacatgtttgcagtttgcaagatgaatttggtgtcggtactgtcattgaagacgacgatgcta |
114 |
Q |
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| T |
27974625 |
tattgggaaatcgaagatcagataacaggtatgcagaaacatgtttgcagtttgcaagatgaatttggcgtcggtactgtcattgaagacgacgatgcta |
27974724 |
T |
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| Q |
115 |
gagctttaatggcagcaacggcactgaaatcgtgtcaagagacgctttcaaagttgcaaaagattcaagcacaatcatcagtagaagctaaagttgaata |
214 |
Q |
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| T |
27974725 |
gagctttaatggcagcaacggcactgaaatcatgtcaagagacgctttcaaagttgcaaaagattcaagcacagtcatcagtagaagctaaagttgaata |
27974824 |
T |
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| Q |
215 |
tgaaagagttaaaaaagctcatgagatgtttgagaatcttagagatcaattcatcactaaattcacgggtcaagaagaacaagaacatgccgacacatgt |
314 |
Q |
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| T |
27974825 |
tgaaagagttaaaaaagctcatgagatgtttgagaatcttagagatcaattcatcactaaattcacgggtcaagaagaacaagaacatgccgacacatgt |
27974924 |
T |
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| Q |
315 |
aagagcataattagtgaagaacagaaaaatattgataaagagatagctagtttggaacaacaagagaatgatgttgttttgttgagagaaacgattaaag |
414 |
Q |
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| T |
27974925 |
aagagcataattagtgaagaacagaaaaatattgataaagagatagctagtttggaacaacaagagaatgatgttgttttgttgagagaaacgattaaag |
27975024 |
T |
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| Q |
415 |
aaaaattggaacaagattctggaaacactcttactgtgactgaaat |
460 |
Q |
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| T |
27975025 |
aaaaattggaacaagattctggaaacactcttactgtgactgaaat |
27975070 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 46041708 - 46041629
Alignment:
| Q |
57 |
gtttgcagtttgcaagatgaatttggtgtcggtactgtcattgaagacgacgatgctagagctttaatggcagcaacggc |
136 |
Q |
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|||||||||||||||||||| ||| || || |||| || |||||||| |||| || |||||||||||||||| ||||| |
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| T |
46041708 |
gtttgcagtttgcaagatgagtttagtatcagtacagtaattgaagataacgacgcacgagctttaatggcagccacggc |
46041629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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