View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_high_18 (Length: 447)
Name: NF15081_high_18
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_high_18 |
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| [»] scaffold0128 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 22980528 - 22980315
Alignment:
| Q |
11 |
cacagagaaaagaatatctctttttattgaatgaatcaaagttagatacaatgtagctatatataaaacattggatctctaactaactcaactagttctg |
110 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22980528 |
cacagagaaaataatatctctttttattgaatgaatcaaagttagttacaatgtagctatatataaaaccttggatctctaactaactcaactagttcta |
22980429 |
T |
|
| Q |
111 |
acaaactagtagttattacaaggctgtgttactctaagagtagtactatagtaactatgatgtgtaacagataactttgctgaacaagctattgaatgaa |
210 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22980428 |
acaaacaagtagttattacaaggctgtgttactctaagagcagtactacagtaactatgatgtgtaacagataactttgctgaacaagctattgaatgaa |
22980329 |
T |
|
| Q |
211 |
tgtagactttaaca |
224 |
Q |
| |
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|||||||||||||| |
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| T |
22980328 |
tgtagactttaaca |
22980315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 8e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 3372000 - 3371789
Alignment:
| Q |
11 |
cacagagaaaagaatatctctttttattgaatgaatcaaagttagatacaatgtagctatatataaaacattggatctctaactaactcaactagttctg |
110 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3372000 |
cacagagaaaagaatatctcttt--attgaatgaatcaaagttagttacattgtagctatatataaaaccttggatctctaactaactcaactagttcta |
3371903 |
T |
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| Q |
111 |
acaaactagtagttattacaaggctgtgttactctaagagtagtactatagtaactatgatgtgtaacagataactttgctgaacaagctattgaatgaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3371902 |
acaaactagtagttattacaaggctgtgttactctaagagcagtactatagtaactatgatgtgtaacagataactttgctgaacaagctattgaatgaa |
3371803 |
T |
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| Q |
211 |
tgtagactttaaca |
224 |
Q |
| |
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|||||||||||||| |
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| T |
3371802 |
tgtagactttaaca |
3371789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 234 - 429
Target Start/End: Complemental strand, 22472791 - 22472598
Alignment:
| Q |
234 |
caatattgatgttatttccagtttaaatttatattaattcatcaacttggtttcaattgtgtgattatttcttttacttcaaaacattctcataaaaatg |
333 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22472791 |
caatattgatgttatttcctgtttaaatttatattaattcatcaacttggttt--attgtgtgattatttcttttacttcaaaacattctcataaaaatg |
22472694 |
T |
|
| Q |
334 |
aataatctattaattgatcctattcaactttcaatcgtgtgatactgtgattatctatgtatatttttagcatataatgttttttcaaatcgatac |
429 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22472693 |
aataatctattaattgatcctattcaactttcaattgtgtgatactgtgattatctatgtatatttttagcatataatgttttttcaaatcgatac |
22472598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 21218452 - 21218381
Alignment:
| Q |
256 |
ttaaatttatattaattcatcaacttggtttcaattgtgtgattatttcttttacttcaaaacattctcata |
327 |
Q |
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|||||||||| || |||| | || |||||||||||||||||||||||| ||| ||||||||| || ||||| |
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| T |
21218452 |
ttaaatttattttcattcttgtacatggtttcaattgtgtgattatttcctttgcttcaaaactttgtcata |
21218381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 7306376 - 7306336
Alignment:
| Q |
278 |
acttggtttcaattgtgtgattatttcttttacttcaaaac |
318 |
Q |
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| T |
7306376 |
acttggtttcaattgtgcgattatttcctttactttaaaac |
7306336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 20040369 - 20040584
Alignment:
| Q |
11 |
cacagagaaaagaatatctcttt--ttattgaatgaatcaaagttagatacaatgtagctatatataaaacattggatctctaactaactcaactagttc |
108 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20040369 |
cacagagaaaagaatatctttttctttattgaatgaatcaaagttagttacaatgtagctatatataaaaccttggatctctaactaactcaactagttc |
20040468 |
T |
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| Q |
109 |
tgacaaactagtagttattacaaggctgtgttactctaagagtagtactatagtaactatgatgtgtaacagataactttgctgaacaagctattgaatg |
208 |
Q |
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| ||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20040469 |
taacaaactagtagttattacaaggctttgttactctaagagcagtactacagtaactatgatgtgtaacggataactttgctgaacaagctattgaatg |
20040568 |
T |
|
| Q |
209 |
aatgtagactttaaca |
224 |
Q |
| |
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|||||||||||||||| |
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| T |
20040569 |
aatgtagactttaaca |
20040584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 20045090 - 20045305
Alignment:
| Q |
11 |
cacagagaaaagaatatctcttt--ttattgaatgaatcaaagttagatacaatgtagctatatataaaacattggatctctaactaactcaactagttc |
108 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20045090 |
cacagagaaaagaatatctttttctttattgaatgaatcaaagttagttacaatgtagctatatataaaaccttggatctctaactaactcaactagttc |
20045189 |
T |
|
| Q |
109 |
tgacaaactagtagttattacaaggctgtgttactctaagagtagtactatagtaactatgatgtgtaacagataactttgctgaacaagctattgaatg |
208 |
Q |
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| ||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20045190 |
taacaaactagtagttattacaaggctttgttactctaagagcagtactacagtaactatgatgtgtaacggataactttgctgaacaagctattgaatg |
20045289 |
T |
|
| Q |
209 |
aatgtagactttaaca |
224 |
Q |
| |
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|||||||||||||||| |
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| T |
20045290 |
aatgtagactttaaca |
20045305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 424
Target Start/End: Original strand, 26010 - 26200
Alignment:
| Q |
226 |
ttgcagttcaatattgatgttatttccagtttaaatttatattaattcatcaacttggtttcaattgtgtgattatttcttttacttcaaaacattctca |
325 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||| | ||||||||| || ||| | |||||||||||||||| ||||||| |||||| | ||||| |
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| T |
26010 |
ttgcaattcaatattgatgttatttcaggtttaaatttgtgttaattcataaatttg-tgtcaattgtgtgattatgtcttttaaatcaaaaaaatctca |
26108 |
T |
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| Q |
326 |
taaaaatgaataatctattaattgatcctattcaactttcaatcgtgtgatactgtgattatctatgtatatttttagcatat-aatgttttttcaaatc |
424 |
Q |
| |
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| ||||||| |||||||| |||| |||||| | | ||||||| | ||| |||||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
26109 |
cataaatgaagaatctattgattggtcctatactaatttcaattg--------tgtaattatctatgtatattttaagcatataaattttttttcaaatc |
26200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 8994 - 9069
Alignment:
| Q |
226 |
ttgcagttcaatattgatgttatttccagtttaaatttatattaattcatcaacttggtttcaattgtgtgattat |
301 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||| |
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| T |
8994 |
ttgcaattcaatattgatgttatttcatgtttaaatttatgttaactcatgaacttggtttcaattgtgtgattat |
9069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 429
Target Start/End: Original strand, 9061 - 9111
Alignment:
| Q |
379 |
tgtgattatctatgtatatttttagcatataatgttttttcaaatcgatac |
429 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
9061 |
tgtgattatctatgtatattgttagcatataatgttttttcaaatcgatac |
9111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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