View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_high_20 (Length: 441)

Name: NF15081_high_20
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_high_20
NF15081_high_20
[»] chr4 (57 HSPs)
chr4 (94-193)||(48870400-48870499)
chr4 (94-193)||(48886086-48886185)
chr4 (100-193)||(48875704-48875797)
chr4 (96-193)||(50250910-50251007)
chr4 (98-217)||(45372191-45372310)
chr4 (322-407)||(48852316-48852401)
chr4 (21-140)||(48898630-48898752)
chr4 (96-185)||(48170700-48170789)
chr4 (322-419)||(48170923-48171020)
chr4 (322-419)||(48735649-48735746)
chr4 (352-419)||(48148049-48148116)
chr4 (23-73)||(48147752-48147802)
chr4 (25-75)||(48735419-48735469)
chr4 (96-138)||(48852576-48852618)
chr4 (96-190)||(49044316-49044410)
chr4 (96-193)||(37827114-37827211)
chr4 (96-186)||(48705479-48705571)
chr4 (322-419)||(48862888-48862985)
chr4 (96-192)||(48891271-48891367)
chr4 (99-154)||(48863126-48863181)
chr4 (322-419)||(49041475-49041569)
chr4 (25-72)||(50250818-50250865)
chr4 (21-71)||(7877727-7877777)
chr4 (300-414)||(45366533-45366647)
chr4 (355-417)||(48898371-48898433)
chr4 (25-141)||(49041201-49041320)
chr4 (356-419)||(7238091-7238151)
chr4 (348-419)||(45372420-45372488)
chr4 (21-69)||(7908325-7908373)
chr4 (25-77)||(45384905-45384957)
chr4 (29-77)||(48902924-48902972)
chr4 (96-151)||(33133934-33133989)
chr4 (304-419)||(33134142-33134257)
chr4 (98-137)||(50672412-50672451)
chr4 (100-185)||(47207762-47207847)
chr4 (25-77)||(48705396-48705448)
chr4 (28-72)||(49048613-49048657)
chr4 (96-192)||(50668911-50669007)
chr4 (12-72)||(50669052-50669112)
chr4 (28-71)||(7237763-7237806)
chr4 (28-71)||(7771396-7771439)
chr4 (322-419)||(7774166-7774260)
chr4 (28-71)||(7790081-7790124)
chr4 (385-419)||(7771051-7771085)
chr4 (355-419)||(7904679-7904740)
chr4 (355-419)||(48870189-48870250)
chr4 (355-419)||(48885875-48885936)
chr4 (389-419)||(48902597-48902627)
chr4 (322-417)||(7822618-7822710)
chr4 (27-72)||(48852663-48852708)
chr4 (27-72)||(48870539-48870584)
chr4 (27-72)||(48875843-48875888)
chr4 (27-72)||(48886225-48886270)
chr4 (96-141)||(49048704-49048749)
chr4 (325-419)||(7789736-7789827)
chr4 (25-77)||(45366243-45366295)
chr4 (386-414)||(48156825-48156853)
[»] chr5 (8 HSPs)
chr5 (25-211)||(42562377-42562566)
chr5 (25-77)||(29696198-29696250)
chr5 (101-151)||(29688011-29688061)
chr5 (109-192)||(29712599-29712682)
chr5 (98-191)||(29696072-29696165)
chr5 (29-77)||(179026-179074)
chr5 (100-143)||(29261158-29261201)
chr5 (362-419)||(42562705-42562762)
[»] chr1 (9 HSPs)
chr1 (26-188)||(24367025-24367190)
chr1 (99-211)||(24310023-24310135)
chr1 (25-72)||(24340405-24340452)
chr1 (25-72)||(24352770-24352817)
chr1 (160-211)||(24322308-24322359)
chr1 (25-72)||(24369477-24369524)
chr1 (27-77)||(24310163-24310213)
chr1 (386-419)||(24322109-24322142)
chr1 (113-206)||(24365193-24365286)
[»] chr6 (5 HSPs)
chr6 (96-190)||(21015667-21015761)
chr6 (96-192)||(21979770-21979866)
chr6 (353-417)||(21980012-21980073)
chr6 (29-72)||(21015806-21015849)
chr6 (28-72)||(21979678-21979722)
[»] chr3 (5 HSPs)
chr3 (97-193)||(47452028-47452124)
chr3 (98-193)||(11015641-11015736)
chr3 (29-72)||(11005994-11006037)
chr3 (29-72)||(11024569-11024612)
chr3 (29-72)||(11015557-11015600)
[»] chr8 (9 HSPs)
chr8 (322-419)||(15348509-15348603)
chr8 (96-193)||(15348720-15348817)
chr8 (25-77)||(4031938-4031990)
chr8 (21-72)||(12200304-12200355)
chr8 (21-72)||(12444732-12444783)
chr8 (385-419)||(12199954-12199988)
chr8 (385-419)||(12444382-12444416)
chr8 (27-77)||(15348848-15348898)
chr8 (98-138)||(4032032-4032072)
[»] chr7 (2 HSPs)
chr7 (96-193)||(48883656-48883753)
chr7 (100-143)||(30120435-30120478)
[»] scaffold0508 (1 HSPs)
scaffold0508 (158-211)||(12156-12209)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 57)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 48870499 - 48870400
Alignment:
Q  94 acacaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaatt 193  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||||| |||||||| |||||||||||||||||||||    
T  48870499 acacaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatt 48870400  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 48886185 - 48886086
Alignment:
Q  94 acacaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaatt 193  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||||| |||||||| |||||||||||||||||||||    
T  48886185 acacaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatt 48886086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 48875797 - 48875704
Alignment:
Q  100 aggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaatt 193  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||| |||||| ||||| || ||||||||||||    
T  48875797 aggtatttgtttgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaacctttaatt 48875704  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 50250910 - 50251007
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaatt 193  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||||||||||||  | | || || |||||||| |||||||||||||||||||||    
T  50250910 acaaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaatt 50251007  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 45372191 - 45372310
Alignment:
Q  98 aaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaattctaa 197  Q
    |||||||||||||| ||||| || ||||||||||||||||| |||| | |||||  |  |||||| ||||||||||||||||||||||||||||||  ||    
T  45372191 aaaggtatttgtttctgaacaccagtggatggattccatagatagaaggttgaattaccatgcaaaaatataaaccctctacatgaacctttaatttcaa 45372290  T
Q  198 gatctaaataagatagggga 217  Q
    |||| |||| |||| |||||    
T  45372291 gatcaaaatgagattgggga 45372310  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 48852401 - 48852316
Alignment:
Q  322 aattctacgagtgtgggttgcggggttaatttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagact 407  Q
    ||||||||||||||| |||| ||   ||||||||||||| ||||||||||| || |||| ||||||||||||||||||||||||||    
T  48852401 aattctacgagtgtgtgttgaggcagtaatttcaaaatgcgaatttgcaaagtgaggattgtgagagataagagaaaaccaagact 48852316  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 48898752 - 48898630
Alignment:
Q  21 acaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaatgtttatatgaat---tggaacacaaaggtatttgtttgtgaac 117  Q
    ||||| ||||||| ||||||||||||||| | || |||||||||||||||||||||| |  | |  |||   | | | |||||||||||||||||||| |    
T  48898752 acaataaaaccactaagtaatcatctgttaactgatcatacccaaaaccatagaaatataaagaaaaatgattaggagacaaaggtatttgtttgtgagc 48898653  T
Q  118 tccggtggatggattccataggt 140  Q
    |||||||||||||||||||||||    
T  48898652 tccggtggatggattccataggt 48898630  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 48170700 - 48170789
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaac 185  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||  ||||||  |  |||||| |||||||| |||||||| ||||    
T  48170700 acaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaac 48170789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 48170923 - 48171020
Alignment:
Q  322 aattctacgagtgtgggttgcggggttaatttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    |||| |||||||||| |||  || | |||||| |||||| ||||||||||| || ||||  ||||||||||||| |||||||||||||||||||||||    
T  48170923 aattttacgagtgtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatt 48171020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 48735649 - 48735746
Alignment:
Q  322 aattctacgagtgtgggttgcggggttaatttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    |||||||||||||||||||  || | ||||||||||||||||||||||||| |  | ||     ||||||||||||||||||||||||||||||||||    
T  48735649 aattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatt 48735746  T

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Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 48148049 - 48148116
Alignment:
Q  352 ttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    |||||||||||||||||| || || ||||  ||||||||||||||||||||||||||||| |||||||    
T  48148049 ttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatt 48148116  T

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Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 48147752 - 48147802
Alignment:
Q  23 aatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatag 73  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  48147752 aatgaaaccaccaagtaatcatctgttaactggtcatacccaaaaccatag 48147802  T

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Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 48735419 - 48735469
Alignment:
Q  25 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaa 75  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  48735419 tgaaaccaccaagtaatcatctgttaaatggtcatacccaaaaccatagaa 48735469  T

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Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 48852618 - 48852576
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccatag 138  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48852618 acaaaggtatttgtttgtgaactccggtggatggattccatag 48852576  T

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Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 49044316 - 49044410
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttta 190  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||     ||| ||||  |||||| |||||||||||||||||||||| ||||    
T  49044316 acaaaggtatttgtttgtgaactctagtggatggattccatagataagttgttgcagcacgatgcaaaaatataaaccctctacatgaacattta 49044410  T

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Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 37827114 - 37827211
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaatt 193  Q
    |||| |||||||||||||||| ||| |||||||||||||||| ||||| | || ||| |   ||||| |||| ||||||||||| |||||||||||||    
T  37827114 acaagggtatttgtttgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaacctttaatt 37827211  T

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Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 48705479 - 48705571
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggt--agaggcttgaagcagaatgcaacaatataaaccctctacatgaacc 186  Q
    ||||||||||||||||||||| ||| || ||||||||||| ||||  ||||| |||||||| |||| ||||||||||| ||||| ||| ||||    
T  48705479 acaaaggtatttgtttgtgaaatccagtagatggattccacaggtagagagggttgaagcacaatgaaacaatataaaacctctgcattaacc 48705571  T

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Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 48862985 - 48862888
Alignment:
Q  322 aattctacgagtgtgggttgcggggttaatttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    ||||||| | ||||| |||||||   ||| || |||||||||||||||||| || ||||  |||||||||||||||||||||||||| ||||| ||||    
T  48862985 aattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatt 48862888  T

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Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 48891367 - 48891271
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaat 192  Q
    ||||||||||||||||||||| ||| ||||||||||||||||  |||| | ||||   || |||||| | || |||||||||||||||| |||||||    
T  48891367 acaaaggtatttgtttgtgaagtccagtggatggattccatacatagatgtttgagttagtatgcaaaagtacaaaccctctacatgaagctttaat 48891271  T

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Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 48863181 - 48863126
Alignment:
Q  99 aaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagca 154  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| | ||||||||    
T  48863181 aaggtatttgtttctgagctccggtggatggattccataggtagatgtttgaagca 48863126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 49041475 - 49041569
Alignment:
Q  322 aattctacgagtgtgggttgcggggttaatttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    |||||||||  ||||||||| |||| ||| || |||||| ||||||||||| ||||||   | |||||||||||||||||||||||| ||||| ||||    
T  49041475 aattctacggttgtgggttgggggggtaagttaaaaatgagaatttgcaaaatgggga---tcagagataagagaaaaccaagacttgcaaacgcatt 49041569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 50250818 - 50250865
Alignment:
Q  25 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  50250818 tgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 50250865  T

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Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 7877777 - 7877727
Alignment:
Q  21 acaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccat 71  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||||||||    
T  7877777 acaatgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccat 7877727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 45366533 - 45366647
Alignment:
Q  300 gagctgaatttgatatgagtgcaattctacgagtgtgggttgcggggttaatttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaa 399  Q
    |||||||| ||||||||| |  || ||||||||||||  |||||| |  || || |||||||||||||||||| || | ||   ||||||||||||||||    
T  45366533 gagctgaagttgatatgaataaaactctacgagtgtgttttgcggcggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaa 45366632  T
Q  400 ccaagacttacaaac 414  Q
    |||| ||||||||||    
T  45366633 ccaatacttacaaac 45366647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 48898433 - 48898371
Alignment:
Q  355 aaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacaca 417  Q
    |||||||||||||||||| |||| ||  ||||||||||| || ||||||||||||||||||||    
T  48898433 aaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacaca 48898371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 49041201 - 49041320
Alignment:
Q  25 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaatgt---ttat-atgaattggaacacaaaggtatttgtttgtgaactcc 120  Q
    |||||||| ||||||||||||||||||  | |||||||||||||||||||||| |   | || ||| ||| | |  |||||||||| |||||||| ||||    
T  49041201 tgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccatagaaatttaagtaatcatg-attaggaggcaaaggtattagtttgtgagctcc 49041299  T
Q  121 ggtggatggattccataggta 141  Q
    ||||||||| |||||||||||    
T  49041300 ggtggatgggttccataggta 49041320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 419
Target Start/End: Original strand, 7238091 - 7238151
Alignment:
Q  356 aaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    ||||||||||||||||| || ||   || |||||||||||||||||||||||||||||||||||    
T  7238091 aaatgtgaatttgcaaagtgagg---gtcagagataagagaaaaccaagacttacaaacacatt 7238151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 419
Target Start/End: Original strand, 45372420 - 45372488
Alignment:
Q  348 taatttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    |||||| |||||||||||||||||| || ||||    |||||||| ||||||||||||||||||||||||||    
T  45372420 taatttgaaaatgtgaatttgcaaaatgaggatc---agagataatagaaaaccaagacttacaaacacatt 45372488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 7908373 - 7908325
Alignment:
Q  21 acaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaacc 69  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||||||    
T  7908373 acaatgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 45384905 - 45384957
Alignment:
Q  25 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 77  Q
    |||||||||||| ||||||| |||||| || ||||||||||||||||||||||    
T  45384905 tgaaaccaccaaataatcatttgttgactgatcatacccaaaaccatagaaat 45384957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 48902972 - 48902924
Alignment:
Q  29 accaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 77  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  48902972 accatcaagtaatcatctcttgagtggtcatacccaaaaccataaaaat 48902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 33133934 - 33133989
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaa 151  Q
    |||||||||||||||| ||||||| |||| ||||||||||||||| || |||||||    
T  33133934 acaaaggtatttgtttatgaactcgggtgaatggattccataggtggaagcttgaa 33133989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 419
Target Start/End: Original strand, 33134142 - 33134257
Alignment:
Q  304 tgaatttgatatgagtgcaattctacgagtgtgggttgcggggttaatttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaa 403  Q
    |||||||| |||||   ||||| ||| |||||| |||| || | | |||| |||||||||||||||||| || ||||  | ||||||||||||||| |||    
T  33134142 tgaatttgttatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaa 33134241  T
Q  404 gacttacaaacacatt 419  Q
    | ||||||||| ||||    
T  33134242 ggcttacaaacgcatt 33134257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 50672451 - 50672412
Alignment:
Q  98 aaaggtatttgtttgtgaactccggtggatggattccata 137  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  50672451 aaaggtatttgtttgtgaactcctgtggatggattccata 50672412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 47207847 - 47207762
Alignment:
Q  100 aggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaac 185  Q
    |||||||||| | | |||||| |||||||||||||||||||||  |||||||     |||||| |||||||| |||||||||||||    
T  47207847 aggtatttgtctctcaactccagtggatggattccataggtagtagcttgaaagtcgatgcaaaaatataaagcctctacatgaac 47207762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 48705396 - 48705448
Alignment:
Q  25 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 77  Q
    |||||| |||||||||||||||||||| || ||||| |||||||||| |||||    
T  48705396 tgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccatggaaat 48705448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 49048613 - 49048657
Alignment:
Q  28 aaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||    
T  49048613 aaccaccaaataatcatctgttgatgggtcatacccaaaaccata 49048657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 50669007 - 50668911
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaat 192  Q
    |||| ||||| ||||| |||| || ||||||||||||||||| | ||| | | |||| | ||||||| |||||||| |||||||| |||||| ||||    
T  50669007 acaatggtatctgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaat 50668911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 50669112 - 50669052
Alignment:
Q  12 gatcattgcacaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    |||||| | |||||||||| ||||||||||||||| ||||  ||||||| |||||||||||    
T  50669112 gatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccata 50669052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 7237763 - 7237806
Alignment:
Q  28 aaccaccaagtaatcatctgttgagtggtcatacccaaaaccat 71  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
T  7237763 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 7771439 - 7771396
Alignment:
Q  28 aaccaccaagtaatcatctgttgagtggtcatacccaaaaccat 71  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
T  7771439 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 7774166 - 7774260
Alignment:
Q  322 aattctacgagtgtgggttgcggggttaatttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    ||||||| ||||||| |||| || | | | || |||||||||||||||||| ||||||   | ||||||||||||||||||   ||||||||||||||    
T  7774166 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatgggga---tcagagataagagaaaaccatagcttacaaacacatt 7774260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 7790124 - 7790081
Alignment:
Q  28 aaccaccaagtaatcatctgttgagtggtcatacccaaaaccat 71  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
T  7790124 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 419
Target Start/End: Complemental strand, 7771085 - 7771051
Alignment:
Q  385 agagataagagaaaaccaagacttacaaacacatt 419  Q
    |||||||||||||||||||||||||||||| ||||    
T  7771085 agagataagagaaaaccaagacttacaaacgcatt 7771051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 7904740 - 7904679
Alignment:
Q  355 aaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    |||||||||||||||||| || ||||    ||||||||||||||||||  |||||||||||||||    
T  7904740 aaaatgtgaatttgcaaagtgaggatc---agagataagagaaaaccataacttacaaacacatt 7904679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 48870250 - 48870189
Alignment:
Q  355 aaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    ||||||||||||||||||  |||||| |   ||||||||| ||||||||||||||||||| ||||    
T  48870250 aaaatgtgaatttgcaaaaaggggatcg---gagataagaaaaaaccaagacttacaaacgcatt 48870189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 48885936 - 48885875
Alignment:
Q  355 aaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    ||||||||||||||||||  |||||| |   ||||||||| ||||||||||||||||||| ||||    
T  48885936 aaaatgtgaatttgcaaaaaggggatcg---gagataagaaaaaaccaagacttacaaacgcatt 48885875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 419
Target Start/End: Complemental strand, 48902627 - 48902597
Alignment:
Q  389 ataagagaaaaccaagacttacaaacacatt 419  Q
    |||||||||||||||||||||||||||||||    
T  48902627 ataagagaaaaccaagacttacaaacacatt 48902597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 417
Target Start/End: Complemental strand, 7822710 - 7822618
Alignment:
Q  322 aattctacgagtgtgggttgcggggttaatttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacaca 417  Q
    |||||||||||| || ||||| | | | | || ||| |||||||||||||| |||||||    |||||||||||||||||| || |||||||||||    
T  7822710 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagtggggatc---agagataagagaaaaccatgatttacaaacaca 7822618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 48852708 - 48852663
Alignment:
Q  27 aaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    |||| |||||||||||||| |||||  |||||||||||||||||||    
T  48852708 aaactaccaagtaatcatcggttgacgggtcatacccaaaaccata 48852663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 48870584 - 48870539
Alignment:
Q  27 aaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    ||||||| ||||||||||||||| | || |||||||||||||||||    
T  48870584 aaaccactaagtaatcatctgttaactgatcatacccaaaaccata 48870539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 48875888 - 48875843
Alignment:
Q  27 aaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    ||||||||||||||||||||| | | || |||||||||||||||||    
T  48875888 aaaccaccaagtaatcatctgctaactgatcatacccaaaaccata 48875843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 48886270 - 48886225
Alignment:
Q  27 aaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    ||||||| ||||||||||||||| | || |||||||||||||||||    
T  48886270 aaaccactaagtaatcatctgttaactgatcatacccaaaaccata 48886225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 49048704 - 49048749
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggta 141  Q
    |||||||||||||| |||||||||  |||||||||||||| |||||    
T  49048704 acaaaggtatttgtctgtgaactctagtggatggattccaaaggta 49048749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 419
Target Start/End: Complemental strand, 7789827 - 7789736
Alignment:
Q  325 tctacgagtgtgggttgcggggttaatttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    ||||| |||||| ||||||| |  || || ||||||||||||| |||| || |||| |   ||||||| ||||||||||||||||||||| ||||    
T  7789827 tctacaagtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcg---gagataaaagaaaaccaagacttacaaacgcatt 7789736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 45366243 - 45366295
Alignment:
Q  25 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 77  Q
    |||||| ||||| |||||||||||| |  ||||||||| ||||||||||||||    
T  45366243 tgaaacaaccaaataatcatctgttaatgggtcataccaaaaaccatagaaat 45366295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 414
Target Start/End: Original strand, 48156825 - 48156853
Alignment:
Q  386 gagataagagaaaaccaagacttacaaac 414  Q
    |||||||||||||||||||||||||||||    
T  48156825 gagataagagaaaaccaagacttacaaac 48156853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 42562377 - 42562566
Alignment:
Q  25 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaatgtt---tata-tgaattggaacacaaaggtatttgtttgtgaactcc 120  Q
    ||||||||| || ||||||| ||||||||| ||||||||||||||||| ||||      |||| | ||| |||  ||||||||||||||||||||  |||    
T  42562377 tgaaaccactaaataatcatttgttgagtgatcatacccaaaaccatataaattaaaaatataatcaataggag-acaaaggtatttgtttgtgatgtcc 42562475  T
Q  121 ggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaattctaagatctaaataagat 211  Q
    | ||||||||||||||||||||| || || | || ||||||| | ||||||||||||||| ||||||||||||| || ||| |||||||||    
T  42562476 gatggatggattccataggtagaagcatgcaccacaatgcaaaagtataaaccctctacacgaacctttaattccaatatcgaaataagat 42562566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 29696250 - 29696198
Alignment:
Q  25 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 77  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||||||||||    
T  29696250 tgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccatagaaat 29696198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 29688061 - 29688011
Alignment:
Q  101 ggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaa 151  Q
    ||||||||| |||||||||||||||||||||||||||| || |||||||||    
T  29688061 ggtatttgtctgtgaactccggtggatggattccatagataaaggcttgaa 29688011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 29712599 - 29712682
Alignment:
Q  109 tttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaat 192  Q
    |||||||||||| |||||||||||||||||  |||| | |||| || ||  ||| | ||||||||||||||| |||||||||||    
T  29712599 tttgtgaactccagtggatggattccatagacagagacatgaaccacaactcaaaagtataaaccctctacacgaacctttaat 29712682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 29696165 - 29696072
Alignment:
Q  98 aaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaa 191  Q
    ||||||||| ||||||||| ||||||||||||||||||||   ||||||||||   | | | ||| | |||||| |||||||| ||||||||||    
T  29696165 aaaggtattcgtttgtgaaatccggtggatggattccatatacagaggcttgagtaacagttcaaaagtataaagcctctacacgaacctttaa 29696072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 179074 - 179026
Alignment:
Q  29 accaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 77  Q
    |||| |||||||||||||||||| |  ||||||||||||||||||||||    
T  179074 accaacaagtaatcatctgttgactcctcatacccaaaaccatagaaat 179026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 29261201 - 29261158
Alignment:
Q  100 aggtatttgtttgtgaactccggtggatggattccataggtaga 143  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||    
T  29261201 aggtatttgtttgtggactccggttgatggattccatagataga 29261158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 42562705 - 42562762
Alignment:
Q  362 gaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    ||||||||||| | || ||  |||||||| ||||||||||||||||||||||| ||||    
T  42562705 gaatttgcaaactcggtattatgagagattagagaaaaccaagacttacaaacgcatt 42562762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 24367190 - 24367025
Alignment:
Q  26 gaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaatgtttatatgaat---tggaacacaaaggtatttgtttgtgaactccgg 122  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||| |  |||| |||   |   |  |||||||| |||  | ||||||| ||    
T  24367190 gaaaccaccaagtaatcatctgttgacttgtcatacccaaaaccatagaaatctgcatataaatgattaagaggcaaaggtaattgcctatgaactctgg 24367091  T
Q  123 tggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctt 188  Q
    ||||||| ||||||||||| | | |||||| ||| ||||||||||||||||||| |||||||||||    
T  24367090 tggatgggttccataggtaaatgtttgaagaagagtgcaacaatataaaccctcgacatgaacctt 24367025  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 24310135 - 24310023
Alignment:
Q  99 aaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaattctaag 198  Q
    ||||||||||| | ||||||||||||||||||||||||| ||| | | |||||  | | | |||||||||||| ||||||||||||||| ||| | ||||    
T  24310135 aaggtatttgtctatgaactccggtggatggattccatacgtaaatgtttgaaaaacactccaacaatataaaacctctacatgaacctataactttaag 24310036  T
Q  199 atctaaataagat 211  Q
    ||| |||| ||||    
T  24310035 atcaaaatgagat 24310023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 24340452 - 24340405
Alignment:
Q  25 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||||    
T  24340452 tgaaaccaccaagtaatcatatgttgattcgtcatacccaaaaccata 24340405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 24352817 - 24352770
Alignment:
Q  25 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||||    
T  24352817 tgaaaccaccaagtaatcatatgttgattcgtcatacccaaaaccata 24352770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 24322359 - 24322308
Alignment:
Q  160 caacaatataaaccctctacatgaacctttaattctaagatctaaataagat 211  Q
    |||||||||| ||||||||||||||||| ||| | ||||||| |||||||||    
T  24322359 caacaatatataccctctacatgaacctctaactttaagatcaaaataagat 24322308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 24369524 - 24369477
Alignment:
Q  25 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    ||||||||||| ||||||||||||||| | |||||| |||||||||||    
T  24369524 tgaaaccaccaggtaatcatctgttgactcgtcatagccaaaaccata 24369477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 24310213 - 24310163
Alignment:
Q  27 aaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 77  Q
    |||| ||||||||||||||| |||| | |||||| ||||||||||||||||    
T  24310213 aaactaccaagtaatcatctcttgactcgtcataaccaaaaccatagaaat 24310163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 24322142 - 24322109
Alignment:
Q  386 gagataagagaaaaccaagacttacaaacacatt 419  Q
    ||||||||||||||||||||||||||||| ||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatt 24322109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 24365286 - 24365193
Alignment:
Q  113 tgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaattctaagatctaaat 206  Q
    ||||||||  |||||||||||||||| || | | ||| |  ||| | ||| ||||| |||||||||||||||||| ||||| ||||||| ||||    
T  24365286 tgaactccattggatggattccatagctaaaagtttggataagagtacaaaaatatgaaccctctacatgaacctataattttaagatcaaaat 24365193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 21015761 - 21015667
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttta 190  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| | ||||| ||   ||||| |||||||||||||||||||||| ||||    
T  21015761 acaaaggtatttgtttgtgaactctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaacattta 21015667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 21979770 - 21979866
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaat 192  Q
    |||||||||||||||| |||| ||| || || || ||||||| |||||| ||||||  | | || || |||||||| ||||||||||||||||||||    
T  21979770 acaaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaat 21979866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 21980012 - 21980073
Alignment:
Q  353 tcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacaca 417  Q
    |||||||||||||| ||||| | |||||   ||||||| ||||||||||||||||||||||||||    
T  21980012 tcaaaatgtgaattcgcaaagttgggat---gagagatgagagaaaaccaagacttacaaacaca 21980073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 21015849 - 21015806
Alignment:
Q  29 accaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    |||||||| ||||||||||||||  |||||||||||||||||||    
T  21015849 accaccaaataatcatctgttgatgggtcatacccaaaaccata 21015806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 21979678 - 21979722
Alignment:
Q  28 aaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    ||||||||||||||||| | |||| |||||||| |||||||||||    
T  21979678 aaccaccaagtaatcatttcttgactggtcataaccaaaaccata 21979722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 47452028 - 47452124
Alignment:
Q  97 caaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaatt 193  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||| | |||||| | ||   || | ||||||||||||||||||||||||||||    
T  47452028 caaaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaacctttaatt 47452124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 11015641 - 11015736
Alignment:
Q  98 aaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaatt 193  Q
    ||||||||||||||||||  ||| || ||||||||||||||||||| | |||||| | ||  ||| | |||||| ||||||||||||| |||||||    
T  11015641 aaaggtatttgtttgtgatgtccagttgatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaacttttaatt 11015736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 11005994 - 11006037
Alignment:
Q  29 accaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  11005994 accaccaagtaatcatctcttgaatggtcatacccaaaaccata 11006037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 11024569 - 11024612
Alignment:
Q  29 accaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  11024569 accaccaagtaatcatctcttgaatggtcatacccaaaaccata 11024612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 11015557 - 11015600
Alignment:
Q  29 accaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    |||||||||||||||||| || | ||||||||||||||||||||    
T  11015557 accaccaagtaatcatctcttaaatggtcatacccaaaaccata 11015600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 15348603 - 15348509
Alignment:
Q  322 aattctacgagtgtgggttgcggggttaatttcaaaatgtgaatttgcaaattggggatagtgagagataagagaaaaccaagacttacaaacacatt 419  Q
    ||||||||||||||| ||||||| | |||||| ||||||||||||||| || |  |||   | |||||||||||||||||||||||||||||| ||||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaagga---tcagagataagagaaaaccaagacttacaaacgcatt 15348509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 15348817 - 15348720
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaatt 193  Q
    ||||||||| || | |||||| ||||||||||||||||||||| |||||| |||||  | | | ||| | || ||| |||||||||||||||||||||    
T  15348817 acaaaggtacttttctgtgaaatccggtggatggattccatagatagaggattgaataatagttcaaaagtacaaagcctctacatgaacctttaatt 15348720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 4031938 - 4031990
Alignment:
Q  25 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 77  Q
    ||||||||||| ||| |||| |||||| |||||||||||||||||||| ||||    
T  4031938 tgaaaccaccaggtagtcatttgttgactggtcatacccaaaaccatataaat 4031990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 12200355 - 12200304
Alignment:
Q  21 acaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    ||||| |||||||||||||||||||| ||||  ||||||| |||||||||||    
T  12200355 acaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 12200304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 12444783 - 12444732
Alignment:
Q  21 acaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 72  Q
    ||||| |||||||||||||||||||| ||||  ||||||| |||||||||||    
T  12444783 acaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 12444732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 419
Target Start/End: Complemental strand, 12199988 - 12199954
Alignment:
Q  385 agagataagagaaaaccaagacttacaaacacatt 419  Q
    |||||||||||||||||| ||||||||||||||||    
T  12199988 agagataagagaaaaccatgacttacaaacacatt 12199954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 419
Target Start/End: Complemental strand, 12444416 - 12444382
Alignment:
Q  385 agagataagagaaaaccaagacttacaaacacatt 419  Q
    |||||||||||||||||| ||||||||||||||||    
T  12444416 agagataagagaaaaccatgacttacaaacacatt 12444382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 15348898 - 15348848
Alignment:
Q  27 aaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 77  Q
    |||||||||||||||||||| || | ||||||||||| |||| ||||||||    
T  15348898 aaaccaccaagtaatcatcttttaattggtcatacccgaaactatagaaat 15348848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 4032032 - 4032072
Alignment:
Q  98 aaaggtatttgtttgtgaactccggtggatggattccatag 138  Q
    |||||||||||||||||||||||  |||||| |||||||||    
T  4032032 aaaggtatttgtttgtgaactccaatggatgaattccatag 4032072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 48883753 - 48883656
Alignment:
Q  96 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctttaatt 193  Q
    ||||||||||||||||||||| ||| ||| |||||||||||| | ||| | | |||| |  |||||| || | |||||||||||| ||||||||||||    
T  48883753 acaaaggtatttgtttgtgaaatccagtgtatggattccatatgcagatgttggaagaaccatgcaaaaacagaaaccctctacacgaacctttaatt 48883656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 30120435 - 30120478
Alignment:
Q  100 aggtatttgtttgtgaactccggtggatggattccataggtaga 143  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  30120435 aggtatttgtttgtggactccggtggatggattccatagataga 30120478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 12209 - 12156
Alignment:
Q  158 tgcaacaatataaaccctctacatgaacctttaattctaagatctaaataagat 211  Q
    ||||| |||||||||| |||||||||||||||||||  |||||| |||| ||||    
T  12209 tgcaaaaatataaaccttctacatgaacctttaatttgaagatcaaaatgagat 12156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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