View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_high_21 (Length: 427)

Name: NF15081_high_21
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_high_21
NF15081_high_21
[»] chr8 (3 HSPs)
chr8 (35-413)||(41733911-41734293)
chr8 (173-214)||(3681628-3681669)
chr8 (173-213)||(45261444-45261484)
[»] chr5 (3 HSPs)
chr5 (173-215)||(28581186-28581228)
chr5 (175-213)||(2263711-2263749)
chr5 (174-215)||(27651552-27651593)
[»] chr6 (2 HSPs)
chr6 (174-218)||(9408334-9408378)
chr6 (173-213)||(11713666-11713706)
[»] chr7 (1 HSPs)
chr7 (166-213)||(22062427-22062474)
[»] chr4 (4 HSPs)
chr4 (173-208)||(22050244-22050279)
chr4 (174-215)||(41897575-41897616)
chr4 (174-207)||(53807430-53807463)
chr4 (173-213)||(17872090-17872130)
[»] chr3 (2 HSPs)
chr3 (174-217)||(51772888-51772931)
chr3 (174-215)||(552172-552213)
[»] chr2 (1 HSPs)
chr2 (174-211)||(7772482-7772519)
[»] scaffold0999 (1 HSPs)
scaffold0999 (173-213)||(2178-2218)
[»] chr1 (1 HSPs)
chr1 (174-214)||(43843890-43843930)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 35 - 413
Target Start/End: Complemental strand, 41734293 - 41733911
Alignment:
Q  35 aaattatgtttgcaactatccgnnnnnnnnatcattaggtgaattttttggtcgaatttagtctagctataaacaatttacctttttaaaacaaataagt 134  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  41734293 aaattatgtttgcaactatccgtttttt--atcattaggtgaattttttggtcgaatttagtctagttataaacaatttacttttttaaaacaaataagt 41734196  T
Q  135 gggatgttcgaggttcaaaacctgattcctacatatattatatattatgcaatatccttaccaattaagttaagctcacaaaaac------gtgtgaact 228  Q
    ||| ||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||      |||||||||    
T  41734195 ggggtgtccgaggttcaaaacccgattcctatatatattatatattatgcaatatccctaccaattaagttaagctcacaaaaacaaaaacgtgtgaact 41734096  T
Q  229 acccatttaacgtggcaattgtgtatgtgctacgtacggcccaaatattattaggttaaatctaatttttgttccaataaaattctcaatttgttacgag 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41734095 acccatttaacgtggcaattgtgtatgtgctacgtacggcccaaatattattaggttaaatctaatttttgttccaataaaattctcaatttgttacgag 41733996  T
Q  329 ctcaaaatttaaatttcgttcttaattttttacctagatttagtcctttctaaagtctctaaaaccatccctcatattccaccat 413  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41733995 ctcaaaatttaaatttagttcttaattttttacctagatttagtcctttctaaagtctctaaaaccatccctcatattccaccat 41733911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 3681669 - 3681628
Alignment:
Q  173 tatatattatgcaatatccttaccaattaagttaagctcaca 214  Q
    ||||||||||| | ||||||||||||||||| ||||||||||    
T  3681669 tatatattatgaattatccttaccaattaagataagctcaca 3681628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 45261444 - 45261484
Alignment:
Q  173 tatatattatgcaatatccttaccaattaagttaagctcac 213  Q
    ||||||||||||||||||| |||||||| ||||| ||||||    
T  45261444 tatatattatgcaatatccctaccaattgagttatgctcac 45261484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 28581228 - 28581186
Alignment:
Q  173 tatatattatgcaatatccttaccaattaagttaagctcacaa 215  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  28581228 tatataatatgcaatatccctaccaattaagttaagctcacaa 28581186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 2263749 - 2263711
Alignment:
Q  175 tatattatgcaatatccttaccaattaagttaagctcac 213  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  2263749 tatattatgcaatgttcttaccaattaagttaagctcac 2263711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 27651552 - 27651593
Alignment:
Q  174 atatattatgcaatatccttaccaattaagttaagctcacaa 215  Q
    |||||||||||| | |||||||||| ||||||||||||||||    
T  27651552 atatattatgcattgtccttaccaactaagttaagctcacaa 27651593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 9408378 - 9408334
Alignment:
Q  174 atatattatgcaatatccttaccaattaagttaagctcacaaaaa 218  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||    
T  9408378 atatattatgcaatatctttaccaattaagttaaactcacgaaaa 9408334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 11713706 - 11713666
Alignment:
Q  173 tatatattatgcaatatccttaccaattaagttaagctcac 213  Q
    ||||||||||||| |||||||||||||| | ||||||||||    
T  11713706 tatatattatgcattatccttaccaattgatttaagctcac 11713666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 22062427 - 22062474
Alignment:
Q  166 catatattatatattatgcaatatccttaccaattaagttaagctcac 213  Q
    |||||||||||||||||| | | |||||||||||| ||||||||||||    
T  22062427 catatattatatattatgtattgtccttaccaattgagttaagctcac 22062474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 22050279 - 22050244
Alignment:
Q  173 tatatattatgcaatatccttaccaattaagttaag 208  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22050279 tatatattatgcaatatccctaccaattaagttaag 22050244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 41897575 - 41897616
Alignment:
Q  174 atatattatgcaatatccttaccaattaagttaagctcacaa 215  Q
    |||||||||||||||||| |||||| |||||||| |||||||    
T  41897575 atatattatgcaatatccctaccaactaagttaatctcacaa 41897616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 53807463 - 53807430
Alignment:
Q  174 atatattatgcaatatccttaccaattaagttaa 207  Q
    ||||||||||||||||||||| ||||||||||||    
T  53807463 atatattatgcaatatccttatcaattaagttaa 53807430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 17872130 - 17872090
Alignment:
Q  173 tatatattatgcaatatccttaccaattaagttaagctcac 213  Q
    |||||| |||||||||||| ||||||||||| |||||||||    
T  17872130 tatatactatgcaatatccctaccaattaagctaagctcac 17872090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 51772931 - 51772888
Alignment:
Q  174 atatattatgcaatatccttaccaattaagttaagctcacaaaa 217  Q
    ||||| |||||||||||| |||||| ||||||||||||||||||    
T  51772931 atataatatgcaatatccctaccaactaagttaagctcacaaaa 51772888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 552213 - 552172
Alignment:
Q  174 atatattatgcaatatccttaccaattaagttaagctcacaa 215  Q
    |||||||||||||||||| |||||| | ||||||||||||||    
T  552213 atatattatgcaatatccctaccaactgagttaagctcacaa 552172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 7772482 - 7772519
Alignment:
Q  174 atatattatgcaatatccttaccaattaagttaagctc 211  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  7772482 atatattatgcattatccttaccaattgagttaagctc 7772519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0999 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 2218 - 2178
Alignment:
Q  173 tatatattatgcaatatccttaccaattaagttaagctcac 213  Q
    ||||||||||| ||||||| ||||||||||||||| |||||    
T  2218 tatatattatgtaatatccctaccaattaagttaaactcac 2178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 43843930 - 43843890
Alignment:
Q  174 atatattatgcaatatccttaccaattaagttaagctcaca 214  Q
    |||||||||||| | |||||||||| |||||||||||||||    
T  43843930 atatattatgcattgtccttaccaactaagttaagctcaca 43843890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University