View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_high_24 (Length: 389)

Name: NF15081_high_24
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_high_24
NF15081_high_24
[»] chr5 (3 HSPs)
chr5 (11-370)||(16139905-16140267)
chr5 (288-333)||(13932478-13932523)
chr5 (305-333)||(12442268-12442296)
[»] chr6 (1 HSPs)
chr6 (288-338)||(14931275-14931325)
[»] chr4 (1 HSPs)
chr4 (287-333)||(25756798-25756844)
[»] chr2 (4 HSPs)
chr2 (292-338)||(32880928-32880974)
chr2 (287-333)||(33407406-33407452)
chr2 (288-338)||(40430747-40430797)
chr2 (277-333)||(45065666-45065722)
[»] chr1 (2 HSPs)
chr1 (288-338)||(9302000-9302050)
chr1 (278-338)||(26545004-26545064)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 16139905 - 16140267
Alignment:
Q  11 cagagacgttaacatcaacttcattctattcaaaaagtgacattaatctttatctgcaattgattatcatttttggtggcttctttcctccttttaaacn 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||     
T  16139905 cagagacgttaacatcaacttcattctattcaaaaagtgacattaatctttatctgcaattgattatcatttttggtggcatctttactccttttaaact 16140004  T
Q  111 nnnnnnnn--cttaattaggtaaccagtgaaaaaataaaagtcaattcatagataaccaatccttacatgatcaaataaaaattgcgaaagtagtcttat 208  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16140005 ttttttttttcttaattaggtaaccagtgaaaaaataaaagtcaattcatagataaccaatccttacatgatcaaataaaaattgcgaaagtagtcttat 16140104  T
Q  209 gtttaaa-tcttcttttgttatgattttcttcattgtttgtttctgtaataaatgtgagaaatacatcatccagttctcattataagagacaatttactt 307  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||||||||||    
T  16140105 gtttaaaatcttcttttgttatgattttctccattgtttgtttctgtaataaatgtgagaaatactccatctaattctcattataagagacaatttactt 16140204  T
Q  308 tttatgttcattaaataattaatgtaattggactatatacacacactagatacaccagttatt 370  Q
    |||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||| |||||    
T  16140205 tttatgttcattgaataactaatataattggactatatatacacactagatacaccaattatt 16140267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 13932478 - 13932523
Alignment:
Q  288 ttataagagacaatttactttttatgttcattaaataattaatgta 333  Q
    |||||||| |||||| ||||||||||||||||  ||||||||||||    
T  13932478 ttataagaaacaattgactttttatgttcattggataattaatgta 13932523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 12442268 - 12442296
Alignment:
Q  305 ctttttatgttcattaaataattaatgta 333  Q
    |||||||||||||||||||||||||||||    
T  12442268 ctttttatgttcattaaataattaatgta 12442296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 14931275 - 14931325
Alignment:
Q  288 ttataagagacaatttactttttatgttcattaaataattaatgtaattgg 338  Q
    ||||||||||||||||||||||||  | |||||||||||| ||||| ||||    
T  14931275 ttataagagacaatttactttttagatacattaaataatttatgtatttgg 14931325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 25756844 - 25756798
Alignment:
Q  287 attataagagacaatttactttttatgttcattaaataattaatgta 333  Q
    ||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  25756844 attataagaaacaattgactttttatgttcattggataattaatgta 25756798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 32880928 - 32880974
Alignment:
Q  292 aagagacaatttactttttatgttcattaaataattaatgtaattgg 338  Q
    ||||||||||||||||||||| | |||||||||||| ||||| ||||    
T  32880928 aagagacaatttactttttatatacattaaataatttatgtatttgg 32880974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 33407406 - 33407452
Alignment:
Q  287 attataagagacaatttactttttatgttcattaaataattaatgta 333  Q
    ||||||||||| ||||||||||||| ||||||| ||||| |||||||    
T  33407406 attataagagaaaatttactttttaagttcattcaataaataatgta 33407452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 40430797 - 40430747
Alignment:
Q  288 ttataagagacaatttactttttatgttcattaaataattaatgtaattgg 338  Q
    ||||||||||||||||||||||||  | |||||||||||| ||||| ||||    
T  40430797 ttataagagacaatttactttttagatacattaaataatttatgtatttgg 40430747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 45065722 - 45065666
Alignment:
Q  277 tccagttctcattataagagacaatttactttttatgttcattaaataattaatgta 333  Q
    |||||||||  ||| ||||||||||||||||||||  | |||||||||||| |||||    
T  45065722 tccagttctatttacaagagacaatttactttttagatacattaaataatttatgta 45065666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 9302050 - 9302000
Alignment:
Q  288 ttataagagacaatttactttttatgttcattaaataattaatgtaattgg 338  Q
    ||||||||||||||||||||||||  | |||||||||||| ||||| ||||    
T  9302050 ttataagagacaatttactttttagatacattaaataatttatgtatttgg 9302000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 26545004 - 26545064
Alignment:
Q  278 ccagttctcattataagagacaatttactttttatgttcattaaataattaatgtaattgg 338  Q
    ||||||||  |||||| | |||||||||||||||  |||||||||||||| ||||| ||||    
T  26545004 ccagttctatttataaaatacaatttactttttagattcattaaataatttatgtatttgg 26545064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University