View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_high_29 (Length: 338)
Name: NF15081_high_29
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 20140423 - 20140731
Alignment:
| Q |
15 |
cataggcatatcagtccaagcaccagaaacatgaccattatcacaaacataagccctaacaacaggttcaccatcatcatgataaccaaatcctctcctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140423 |
cataggcatatcagtccaagcaccagaaacatgaccattatcacaaacataagctctaacaacaggttcaccatcatcatgataaccaaatcctctcctc |
20140522 |
T |
|
| Q |
115 |
aaacaaaaagcagagtgaagatcccaagtatgattacaagaacaaaaagcacaagccaaatcaatcttcttccgattactaatatcattcacagtcttcc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20140523 |
aaacaaaaagcagagtgaagatcccaagtatgattacaagaacaaaaagcacaagccaaatcaatcttcttccgattactaatatcattcacagtcttcc |
20140622 |
T |
|
| Q |
215 |
aaacacgtgttttcttgaaattcataaaaacacctcgaaaaagtctatactttctcttctcttccaaatgaacacaaccaggccaatcacaaacgtataa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140623 |
aaacacgtgttttcttgaaattcataaaaatacctcgaaaaagtctatactttctcttctcttccaaatgaacacaaccaggccaatcacaaacgtataa |
20140722 |
T |
|
| Q |
315 |
acaatcatc |
323 |
Q |
| |
|
||||||||| |
|
|
| T |
20140723 |
acaatcatc |
20140731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 44317838 - 44318146
Alignment:
| Q |
15 |
cataggcatatcagtccaagcaccagaaacatgaccattatcacaaacataagccctaacaacaggttcaccatcatcatgataaccaaatcctctcctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44317838 |
cataggcatatcagtccaagcaccagaaacatgaccattatcacaaacataagctctaacaacaggttcaccatcatcatgataaccaaatcctctcctc |
44317937 |
T |
|
| Q |
115 |
aaacaaaaagcagagtgaagatcccaagtatgattacaagaacaaaaagcacaagccaaatcaatcttcttccgattactaatatcattcacagtcttcc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44317938 |
aaacaaaaagcagagtgaagatcccaagtatgattacaagaacaaaaagcacaagccaaatcaatcttcttccgattactaatatcattcacagtcttcc |
44318037 |
T |
|
| Q |
215 |
aaacacgtgttttcttgaaattcataaaaacacctcgaaaaagtctatactttctcttctcttccaaatgaacacaaccaggccaatcacaaacgtataa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44318038 |
aaacacgtgttttcttgaaattcataaaaatacctcgaaaaagtctatactttctcttctcttccaaatgaacacaaccaggccaatcacaaacgtataa |
44318137 |
T |
|
| Q |
315 |
acaatcatc |
323 |
Q |
| |
|
||||||||| |
|
|
| T |
44318138 |
acaatcatc |
44318146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 29632271 - 29632351
Alignment:
| Q |
15 |
cataggcatatcagtccaagcaccagaaacatgaccattatcacaaacataagccctaacaacaggttcaccatcatcatg |
95 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||| ||||||||| |
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|
| T |
29632271 |
cataggtaaatcagtccaagcaccagaaacatgaccattgtcacaaacataagtacaaacaacaggttcacgatcatcatg |
29632351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 16320370 - 16320450
Alignment:
| Q |
15 |
cataggcatatcagtccaagcaccagaaacatgaccattatcacaaacataagccctaacaacaggttcaccatcatcatg |
95 |
Q |
| |
|
||||||| |||||||||| |||||||||| || |||||||| |||||||||| | |||| ||||||||||||||||||| |
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|
| T |
16320370 |
cataggctcatcagtccaatcaccagaaactcgatcattatcagaaacataagcacaaacatcaggttcaccatcatcatg |
16320450 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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