View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_high_47 (Length: 242)
Name: NF15081_high_47
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_high_47 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 26412962 - 26412714
Alignment:
| Q |
1 |
attaatagtaaaatacaaagtcatcacatgctctaatcgttacatataaaacgtagtagcggagtttaaaggtaaaattcattcatagcaattaaaataa |
100 |
Q |
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| T |
26412962 |
attaatagtaaaatacaaagtcatcacatgctctaattgttacacataaaacgtagtagcggagtttaaaggcaaaattcattcatagcaattaaaataa |
26412863 |
T |
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| Q |
101 |
gaaattacaaataatgctgccataaactaacattaactagaaaactacaatgaaacttgtgtaatatcgatccataagatcttgaagattgattggctaa |
200 |
Q |
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| T |
26412862 |
gaaattacaaataatgctgccataaactaacattaactacaaaactacagtgaaacttgtgtaatatcgatccataagatcttgaagattgattggctaa |
26412763 |
T |
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| Q |
201 |
aacttgttaa-------ttttccacaacattccttattgctttcttctc |
242 |
Q |
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| T |
26412762 |
aacttgttaattttgaattttccacaacattccttattgctttcatctc |
26412714 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 43994302 - 43994339
Alignment:
| Q |
110 |
aataatgctgccataaactaacattaactagaaaacta |
147 |
Q |
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| T |
43994302 |
aatagtgctgccacaaactaacattaactagaaaacta |
43994339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 2153665 - 2153624
Alignment:
| Q |
114 |
atgctgccataaactaacattaactagaaaactacaatgaaa |
155 |
Q |
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| T |
2153665 |
atgctgcaataaactaacattgcctagaaaactacaatgaaa |
2153624 |
T |
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