View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_high_5 (Length: 618)

Name: NF15081_high_5
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_high_5
NF15081_high_5
[»] chr2 (6 HSPs)
chr2 (1-511)||(43412697-43413210)
chr2 (525-582)||(43399272-43399329)
chr2 (91-173)||(929010-929092)
chr2 (107-229)||(34504177-34504300)
chr2 (555-589)||(43413220-43413254)
chr2 (183-231)||(22651102-22651150)
[»] chr7 (5 HSPs)
chr7 (91-173)||(32854239-32854321)
chr7 (107-170)||(48723328-48723391)
chr7 (109-173)||(29724368-29724432)
chr7 (116-229)||(42121329-42121442)
chr7 (91-173)||(33645263-33645349)
[»] chr3 (8 HSPs)
chr3 (106-229)||(48855510-48855633)
chr3 (90-229)||(53683921-53684061)
chr3 (107-173)||(54362031-54362097)
chr3 (110-229)||(37311647-37311766)
chr3 (108-160)||(32737826-32737878)
chr3 (187-230)||(53436172-53436215)
chr3 (131-173)||(34408058-34408100)
chr3 (113-173)||(43271651-43271711)
[»] chr5 (5 HSPs)
chr5 (115-228)||(141319-141432)
chr5 (109-173)||(6818578-6818642)
chr5 (183-229)||(12289080-12289126)
chr5 (107-173)||(29429610-29429676)
chr5 (87-161)||(6809624-6809698)
[»] chr1 (2 HSPs)
chr1 (88-171)||(31820642-31820724)
chr1 (108-173)||(3150653-3150718)
[»] chr4 (4 HSPs)
chr4 (91-229)||(3527864-3528003)
chr4 (107-173)||(50685593-50685659)
chr4 (108-229)||(8488651-8488772)
chr4 (88-173)||(13901996-13902080)
[»] chr6 (2 HSPs)
chr6 (107-172)||(7509734-7509799)
chr6 (183-229)||(5456575-5456621)
[»] chr8 (1 HSPs)
chr8 (110-164)||(12883128-12883182)


Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 43412697 - 43413210
Alignment:
Q  1 agagcaacttagaatgggggaaaaccaaatctagtgttcctcacatatgcgagcgaatatataagcgagaaaatattattttgtattggaaaatgctaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43412697 agagcaacttagaatgggggaaaaccaaatctagtgttcctcacatatgcgagcgaatatataagtgagaaaatattattttgtattggaaaatgctaac 43412796  T
Q  101 gtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaa---tcaatgcattagaatttaannnnnnncattttgattaacttaa 197  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||| || ||   ||||| |||||||||||||       |||||||||||| ||||    
T  43412797 gtgtgcccttaaggcacaagttaattagttaaaagtggaaataatttgctcaaaaaatcaatacattagaatttaatttttttcattttgattaatttaa 43412896  T
Q  198 tacacaaaatttaagagaatatttctacttttatttttagattgtttaatatatggcttaaaacataagttagcaaaaccccttttatatttgattatta 297  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||    
T  43412897 tacacaaaatttaagagaatgtttctacttttatttttagattgtttaacatatgccttaaaacataagttagcaagaccc-ttttatatttgattatta 43412995  T
Q  298 tagtaaatctctccttgtgagggg-ctaagttgagaagtaaattggttgctatcccttttatgaagatattttagaaactaattttaaagattcacctta 396  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  43412996 tagtaaatctctccttgtgagggggctaagttgagaagtaaattggttgctatcccttttatgaagatattttagaaactaattttaaagagtcgcctta 43413095  T
Q  397 taaattgacggttacacgtgtaaaataacactccgtacatcaatttctaacttcaatcatcatacatgttggatattgcatgcactacgtgttttaagta 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43413096 taaattgacggttacacgtgtaaaataacactccgtacatcaatttctaacttcaatcatcatacatgttggatattgcatgcactacgtgttttaagta 43413195  T
Q  497 atgtttatgtttcat 511  Q
    |||||||||||||||    
T  43413196 atgtttatgtttcat 43413210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 525 - 582
Target Start/End: Original strand, 43399272 - 43399329
Alignment:
Q  525 ggtttatggctcgaagaatttactagtaataaaaagttgagaatgttgttgattccat 582  Q
    ||||||||||| || ||| ||||||||||| |||||||||||||||||||||||||||    
T  43399272 ggtttatggctggaggaacttactagtaatgaaaagttgagaatgttgttgattccat 43399329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 929010 - 929092
Alignment:
Q  91 aaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 173  Q
    ||||| |||| ||| |||||||| ||||||||||  ||| |||||| |||||| |||||| ||||||||||||| ||||||||    
T  929010 aaatgttaacttgtgtccttaagacacaagttaaagagtcaaaagtagaaatattttgttgtaatcaatgcatttgaatttaa 929092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 34504177 - 34504300
Alignment:
Q  107 ccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnnca-ttttgattaacttaatacacaaa 205  Q
    ||||||| ||||||||||| | | |||||| ||||||| |||||  |||||||||||| |||||||         | |||| ||||| | ||| ||||||    
T  34504177 ccttaagacacaagttaatgaatcaaaagtagaaataagttgttgcaatcaatgcatttgaatttagttttttttacttttaattaattgaatgcacaaa 34504276  T
Q  206 atttaagagaatatttctactttt 229  Q
    |||||||||||||||| |||||||    
T  34504277 atttaagagaatatttttactttt 34504300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 589
Target Start/End: Original strand, 43413220 - 43413254
Alignment:
Q  555 aaaaagttgagaatgttgttgattccattcatgat 589  Q
    |||||||||||||||||||||||||||| ||||||    
T  43413220 aaaaagttgagaatgttgttgattccatccatgat 43413254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 22651150 - 22651102
Alignment:
Q  183 ttttgattaacttaatacacaaaatttaagagaatatttctacttttat 231  Q
    |||||||||| | ||| || |||||||||||||||||||||| ||||||    
T  22651150 ttttgattaattgaatgcataaaatttaagagaatatttctatttttat 22651102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 32854239 - 32854321
Alignment:
Q  91 aaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 173  Q
    |||||||||| |||  ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  32854239 aaatgctaacctgtgcccttaaaacacaagttaatgagttaaaagtggaaataatttgttctaatcaatgcatttgaaattaa 32854321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 48723391 - 48723328
Alignment:
Q  107 ccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatt 170  Q
    ||||||||||||||||||| |||| |||||||||||| |||||| |||| |||||||| |||||    
T  48723391 ccttaaggcacaagttaatgagtttaaagtggaaatattttgttgtaatgaatgcatttgaatt 48723328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 29724432 - 29724368
Alignment:
Q  109 ttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 173  Q
    |||||| |||||| ||| ||| |||||| ||||||||||||| |||| |||||||| ||||||||    
T  29724432 ttaaggtacaagtaaataagtcaaaagtagaaataatttgttgtaataaatgcatttgaatttaa 29724368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 42121329 - 42121442
Alignment:
Q  116 acaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnncattttgattaacttaatacacaaaatttaagaga 215  Q
    |||||||||| |||||||| |  |||||||||||| |||| |||||||| ||||||||         |||| ||||| | |||  |||||||||||||||    
T  42121329 acaagttaatgagttaaaaatataaataatttgttgtaattaatgcatttgaatttaattttttcacttttcattaattgaatgtacaaaatttaagaga 42121428  T
Q  216 atatttctactttt 229  Q
    || |||||||||||    
T  42121429 atgtttctactttt 42121442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 33645349 - 33645263
Alignment:
Q  91 aaatgctaacgtgtatccttaaggcacaagttaatt-----agttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 173  Q
    |||||||||| |||  |||||||||||||||||||      ||| |||||||||||||||||||| ||| ||||||||| ||||||||    
T  33645349 aaatgctaacttgtgcccttaaggcacaagttaatgtaatgagtcaaaagtggaaataatttgttgtaa-caatgcatttgaatttaa 33645263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 48855633 - 48855510
Alignment:
Q  106 tccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnncattttgattaacttaatacacaaa 205  Q
    |||||||||||||||||||| || ||||||||||||||| ||||| |||| ||| |||| ||||||||         ||| |||||| | ||||||||||    
T  48855633 tccttaaggcacaagttaatgagctaaaagtggaaataaattgttgtaattaattcatttgaatttaattctttaattttagattaattgaatacacaaa 48855534  T
Q  206 atttaagagaatatttctactttt 229  Q
    ||| ||||||||||||||||||||    
T  48855533 attcaagagaatatttctactttt 48855510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 90 - 229
Target Start/End: Original strand, 53683921 - 53684061
Alignment:
Q  90 aaaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa-nnnnnnncattttga 188  Q
    |||||| |||| |||  ||||||||||||||||||| ||  ||||||| |||||||||||| |||| |||| ||| ||||||||        | ||||||    
T  53683921 aaaatgttaacttgtgcccttaaggcacaagttaatgagccaaaagtgaaaataatttgttttaattaatgtatttgaatttaattttttgactttttga 53684020  T
Q  189 ttaacttaatacacaaaatttaagagaatatttctactttt 229  Q
    |||| | |||||||||||| |||||||||||||||||||||    
T  53684021 ttaattgaatacacaaaatataagagaatatttctactttt 53684061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 54362031 - 54362097
Alignment:
Q  107 ccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 173  Q
    ||||||||||||||||||| ||| |||||| |||||| || ||| ||||||||||||| ||||||||    
T  54362031 ccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatttaa 54362097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 37311647 - 37311766
Alignment:
Q  110 taaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnncattttgattaacttaatacacaaaattt 209  Q
    |||||||||||||||| ||  ||||||  |||||||||||| |||| |||||||| ||||||||         |||||||||| | ||| ||||||||      
T  37311647 taaggcacaagttaatgagacaaaagtataaataatttgttgtaattaatgcatttgaatttaattttttgacttttgattaattgaatgcacaaaatac 37311746  T
Q  210 aagagaatatttctactttt 229  Q
    |||||||| |||||||||||    
T  37311747 aagagaatgtttctactttt 37311766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 32737878 - 32737826
Alignment:
Q  108 cttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatg 160  Q
    |||||||||||||||||| ||| |||| || |||||||||||| |||||||||    
T  32737878 cttaaggcacaagttaatgagtcaaaaatgaaaataatttgttgtaatcaatg 32737826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 53436215 - 53436172
Alignment:
Q  187 gattaacttaatacacaaaatttaagagaatatttctactttta 230  Q
    |||||| | |||||||||||||||||| ||||||||||||||||    
T  53436215 gattaattaaatacacaaaatttaagaaaatatttctactttta 53436172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 34408058 - 34408100
Alignment:
Q  131 aaaagtggaaataatttgttctaatcaatgcattagaatttaa 173  Q
    |||||||||||||||||||| |||||||||||||  |||||||    
T  34408058 aaaagtggaaataatttgttgtaatcaatgcatttaaatttaa 34408100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 43271651 - 43271711
Alignment:
Q  113 ggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 173  Q
    ||||||||||||| | | ||||||||||||| | |||| |||| |||||||| ||||||||    
T  43271651 ggcacaagttaatgaatcaaaagtggaaatattctgttgtaataaatgcatttgaatttaa 43271711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 141319 - 141432
Alignment:
Q  115 cacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnncattttgattaacttaatacacaaaatttaagag 214  Q
    ||||||||||| || ||||||||||||||| ||||| |||| |||||||| ||||||||         |||||||||| | ||| ||||||||| |||||    
T  141319 cacaagttaatgagctaaaagtggaaataaattgttgtaattaatgcatttgaatttaattctttaacttttgattaattgaatgcacaaaattcaagag 141418  T
Q  215 aatatttctacttt 228  Q
    ||||||||||||||    
T  141419 aatatttctacttt 141432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 6818578 - 6818642
Alignment:
Q  109 ttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 173  Q
    |||| |||||||||||| |||||||| || |||||||||||| ||||||||| ||| ||||||||    
T  6818578 ttaaagcacaagttaatgagttaaaaatgaaaataatttgttgtaatcaatgtatttgaatttaa 6818642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 12289080 - 12289126
Alignment:
Q  183 ttttgattaacttaatacacaaaatttaagagaatatttctactttt 229  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||    
T  12289080 ttttgattaattgaatacacaaaattcaagagaatatttctactttt 12289126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 29429610 - 29429676
Alignment:
Q  107 ccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 173  Q
    ||||||||||||||||||  ||| ||||||||||||| |||||| |||| ||| |||| ||||||||    
T  29429610 ccttaaggcacaagttaaagagtcaaaagtggaaatattttgttgtaattaatacatttgaatttaa 29429676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 6809624 - 6809698
Alignment:
Q  87 tggaaaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgc 161  Q
    ||||||||| |||| ||| || ||||  ||||||||||  ||| |||||||||||||||||||  ||||||||||    
T  6809624 tggaaaatgttaacttgtgtctttaaaacacaagttaaagagtcaaaagtggaaataatttgtcgtaatcaatgc 6809698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 31820724 - 31820642
Alignment:
Q  88 ggaaaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaattt 171  Q
    |||||||| |||| |||  ||||||||| ||||||||| ||| |||||||||||||||||||| ||||||| ||||| ||||||    
T  31820724 ggaaaatgttaacttgtgcccttaaggcgcaagttaataagtcaaaagtggaaataatttgttgtaatcaa-gcatttgaattt 31820642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 3150653 - 3150718
Alignment:
Q  108 cttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 173  Q
    |||||| ||||||||||  ||| |||||||||||||||||||| |||| ||| |||| ||||||||    
T  3150653 cttaagacacaagttaacaagtcaaaagtggaaataatttgttgtaattaatacatttgaatttaa 3150718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 91 - 229
Target Start/End: Original strand, 3527864 - 3528003
Alignment:
Q  91 aaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnnca-ttttgat 189  Q
    ||||| |||| ||| |||||||| ||||||| ||| |||  ||||| |||||| |||||| ||||||||||||| ||||||||        | |||||||    
T  3527864 aaatgttaacatgtgtccttaagacacaagtcaataagtccaaagtagaaatattttgttgtaatcaatgcatttgaatttaatttattttatttttgat 3527963  T
Q  190 taacttaatacacaaaatttaagagaatatttctactttt 229  Q
    ||| | ||| |||||||| ||||||||| |||||||||||    
T  3527964 taattgaatgcacaaaatataagagaatgtttctactttt 3528003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 50685593 - 50685659
Alignment:
Q  107 ccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 173  Q
    ||||||||||||||||||| ||  |||||||||||||||||||| |||| |||| ||| ||||||||    
T  50685593 ccttaaggcacaagttaatgagccaaaagtggaaataatttgttgtaataaatgtatttgaatttaa 50685659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 8488772 - 8488651
Alignment:
Q  108 cttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnncattttgattaacttaatacacaaaat 207  Q
    ||||| |||||||||||| || |||||  |||||||||||| | |||| |||||||| ||||||||         |||||||||| | ||||||||||||    
T  8488772 cttaaagcacaagttaatgagctaaaaaaggaaataatttggtgtaattaatgcatttgaatttaattttttgacttttgattaattgaatacacaaaat 8488673  T
Q  208 ttaagagaatatttctactttt 229  Q
      |||||||| |||||||||||    
T  8488672 acaagagaatgtttctactttt 8488651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 13901996 - 13902080
Alignment:
Q  88 ggaaaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 173  Q
    |||||||| |||| |||| | |||||||| ||| |||| ||| |||||| |||||| || ||| ||||||||||||| ||||||||    
T  13901996 ggaaaatgttaacttgtacctttaaggca-aaggtaatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatttaa 13902080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 7509799 - 7509734
Alignment:
Q  107 ccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaattta 172  Q
    ||||||||||||||||||| ||| |||||| |||||| | |||| ||||||||||||| |||||||    
T  7509799 ccttaaggcacaagttaatgagtcaaaagtagaaatattgtgttgtaatcaatgcatttgaattta 7509734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 5456621 - 5456575
Alignment:
Q  183 ttttgattaacttaatacacaaaatttaagagaatatttctactttt 229  Q
    |||||||||| | ||||||||||||| ||||||||||||||| ||||    
T  5456621 ttttgattaattgaatacacaaaattcaagagaatatttctattttt 5456575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 12883182 - 12883128
Alignment:
Q  110 taaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcatt 164  Q
    |||||||||||||||| ||||| ||||| |||||||||||| |||| ||||||||    
T  12883182 taaggcacaagttaatgagttataagtgaaaataatttgttgtaattaatgcatt 12883128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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