View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_high_6 (Length: 553)
Name: NF15081_high_6
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_high_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 259 - 553
Target Start/End: Complemental strand, 31669504 - 31669210
Alignment:
| Q |
259 |
ggaatatcactaaactatgaattgtgggtatatgatgataataataatatgtttataagaattcatttatatgctaaattgtgtcgatcgatgttccaca |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31669504 |
ggaatatcactaaactatgaattgtgggtatatgatgataagaataatatgtttataagaattcatttatatgctaaattgtgtcgatcgatgttccaca |
31669405 |
T |
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| Q |
359 |
tcaggattggacttcgagattccgcattagtattggacaagtattctttcgatatggaaatcttgcacggcgataataggagttcagactttagtctgat |
458 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| || |||| ||||| |
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| T |
31669404 |
tcagaattggacttcgagattccgcattagtattggataagtattctttcgatatggaaatcttgcacgacgataatagaagttccgattttaacctgat |
31669305 |
T |
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| Q |
459 |
tggtgagaattttagtaggatagttagagggatgttcaggattattccacccaaccattccataaaatcaacacagatattattgtgtgatacat |
553 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
31669304 |
tggtgagcattttagtagaatagttagagggatgttcaggattattccgcccaatcattccataaaatcaacatagatattattgtgtgatacat |
31669210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 2607085 - 2606833
Alignment:
| Q |
8 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
2607085 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaattgtcattagttagtacaattgacttaccttattcatgt |
2606986 |
T |
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| Q |
108 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaaacttggacagctataaagccttgt |
207 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
2606985 |
acaattgttttgctctactgtaattccaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacatctataaagccttgt |
2606886 |
T |
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| Q |
208 |
acagccgtgtgtaaa--atacagcagaaatatattagcctttgttattttata |
258 |
Q |
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|||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
2606885 |
acagccatgtgtaaaatatatagcagaaatatattagcctttgttattttata |
2606833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 25450628 - 25450888
Alignment:
| Q |
8 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
107 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25450628 |
gacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
25450727 |
T |
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| Q |
108 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaaacttggacagctataaagccttgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25450728 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
25450827 |
T |
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| Q |
208 |
acagccgtgtgtaaaatacagcagaaatatattagcctttgttattttataggaatatcac |
268 |
Q |
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| T |
25450828 |
acagccgtgtgtaaaatatagcagaaatatattagcctttgttaattattagaaatatcac |
25450888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 25446065 - 25446308
Alignment:
| Q |
8 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
107 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25446065 |
gacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatcaattgtcattagtcagtacaattgacttaccttattcatgt |
25446164 |
T |
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| Q |
108 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaaacttggacagctataaagccttgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25446165 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
25446264 |
T |
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| Q |
208 |
acagccgtgtgtaaaatacagcagaaatatattagcctttgtta |
251 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
25446265 |
acaaccgtgtgtaaaatatagcagaaatatattagcctttgtta |
25446308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 31901369 - 31901621
Alignment:
| Q |
8 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
107 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
31901369 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttatgatcaactgtcattagtcagtaaagttgacttaccttattcatgt |
31901468 |
T |
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| Q |
108 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaaacttggacagctataaagccttgt |
207 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31901469 |
acaattgttttgctctactgtaattcccattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
31901568 |
T |
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| Q |
208 |
acagccgtgtgtaaa--atacagcagaaatatattagcctttgttattttata |
258 |
Q |
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||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |
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| T |
31901569 |
acagccgtgtgtaaaagatatagcataaatatattagcctttgttattttata |
31901621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 31925239 - 31925485
Alignment:
| Q |
11 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgtaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31925239 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacagttgacttaccttattcatgtaca |
31925338 |
T |
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| Q |
111 |
attgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaaacttggacagctataaagccttgtaca |
210 |
Q |
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||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
31925339 |
attgttttgctctactgtaattccaa-tcaataaatttaattattatgtaaatgcatttgattaccttgtaaagcttggacaactataaagccttgtaca |
31925437 |
T |
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| Q |
211 |
gccgtgtgtaaa--atacagcagaaatatattagcctttgttatttta |
256 |
Q |
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||||||||||| ||| |||| ||||||||||||||||||||||||| |
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| T |
31925438 |
accgtgtgtaaaagatatagcataaatatattagcctttgttatttta |
31925485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 13270301 - 13270358
Alignment:
| Q |
346 |
tcgatgttccacatcaggattggacttcgagattccgcattagtattggacaagtatt |
403 |
Q |
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|||| ||||||| |||| ||||| ||||||| ||||||||||||| |||||| ||||| |
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| T |
13270301 |
tcgaagttccacgtcagtattgggcttcgaggttccgcattagtactggacaggtatt |
13270358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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