View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_high_8 (Length: 549)

Name: NF15081_high_8
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_high_8
NF15081_high_8
[»] chr2 (4 HSPs)
chr2 (285-535)||(41847021-41847269)
chr2 (238-282)||(31204215-31204260)
chr2 (238-282)||(31184494-31184538)
chr2 (243-282)||(31173381-31173421)
[»] chr5 (3 HSPs)
chr5 (242-284)||(27808554-27808597)
chr5 (238-283)||(11822238-11822284)
chr5 (238-283)||(27809799-27809845)
[»] chr8 (3 HSPs)
chr8 (238-283)||(23231336-23231382)
chr8 (238-282)||(45120759-45120804)
chr8 (238-283)||(17443371-17443417)
[»] chr1 (1 HSPs)
chr1 (243-282)||(18883847-18883887)
[»] chr6 (1 HSPs)
chr6 (238-283)||(31860743-31860789)
[»] chr4 (2 HSPs)
chr4 (238-283)||(1593859-1593905)
chr4 (238-283)||(2333859-2333905)
[»] chr3 (2 HSPs)
chr3 (238-283)||(51545240-51545286)
chr3 (243-282)||(24398591-24398631)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 285 - 535
Target Start/End: Complemental strand, 41847269 - 41847021
Alignment:
Q  285 gataaataaccccacaaatcacttttcagcagattttatcttgactcatttgcttcttcataaacttctcaggaaatcatttctcagacttaagctttta 384  Q
    |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41847269 gataaataaccc-acaaatcacttttcagcagattt-atcttcactcatttgcttcttcgtaaacttctcaggaaatcatttctcagacttaagctttta 41847172  T
Q  385 aattatgaactcttgaagnnnnnnnnnggtgcattttgttggtattagaagtgctaatcaattccttttagctatcgttagctaaatatctcattcccat 484  Q
    ||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41847171 aattatgaactcttgaagaaacaaaaatgtgcattttgttggtattagaagtgctaatcaattccttttagctatctttagctaaatatctcattcccat 41847072  T
Q  485 cagaacttttaacaatctttaattaaacatctcattcatatattgtctgtg 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41847071 cagaacttttaacaatctttaattaaacatctcattcatatattgtctgtg 41847021  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 31204215 - 31204260
Alignment:
Q  238 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttc 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  31204215 ttacttgtgtcattgtgaacttttgtatgtcagaaaagcaattttc 31204260  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 31184494 - 31184538
Alignment:
Q  238 ttacttgtgtcattgtgaacttttgtatgtcagaaaacaattttc 282  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||    
T  31184494 ttacttgtgtcattgtgaacttttgtatgtcaaaaagcaattttc 31184538  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 31173421 - 31173381
Alignment:
Q  243 tgtgtcattgtgaacttttgtatgtcagaaaa-caattttc 282  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  31173421 tgtgtcattgtgaacttttgtatgtcagaaaagcaattttc 31173381  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 27808597 - 27808554
Alignment:
Q  242 ttgtgtcattgtgaacttttgtatgtcagaaaa-caattttctc 284  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  27808597 ttgtgtcattgtgaacttttgtatgtcagaaaagcaattttctc 27808554  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 11822238 - 11822284
Alignment:
Q  238 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttct 283  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||    
T  11822238 ttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttct 11822284  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 27809799 - 27809845
Alignment:
Q  238 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttct 283  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||||    
T  27809799 ttacttgtgtcattgtgtacttttgtatgtgagaaaatcaattttct 27809845  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 23231336 - 23231382
Alignment:
Q  238 ttacttgtgtcattgtgaacttttgtatgtcag-aaaacaattttct 283  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||    
T  23231336 ttacttgtgtcattgtgaacttttctatgtcagaaaaacaattttct 23231382  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 45120759 - 45120804
Alignment:
Q  238 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttc 282  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||    
T  45120759 ttacttgtgtcattgtgaacttttctatgtcagaaaagcaattttc 45120804  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 17443371 - 17443417
Alignment:
Q  238 ttacttgtgtcattgtgaacttttgtatgtcag-aaaacaattttct 283  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||||    
T  17443371 ttacttgtgtcattgtgaagttttctatgtcagaaaaacaattttct 17443417  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 18883887 - 18883847
Alignment:
Q  243 tgtgtcattgtgaacttttgtatgtcagaaaa-caattttc 282  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  18883887 tgtgtcattgtgaacttttgtatgtcagaaaagcaattttc 18883847  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 31860743 - 31860789
Alignment:
Q  238 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttct 283  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||    
T  31860743 ttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttct 31860789  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 1593859 - 1593905
Alignment:
Q  238 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttct 283  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||    
T  1593859 ttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttct 1593905  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 2333859 - 2333905
Alignment:
Q  238 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttct 283  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||    
T  2333859 ttacttgtgtcattgtgaagttttttatgtcagaaaagcaattttct 2333905  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 51545286 - 51545240
Alignment:
Q  238 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttct 283  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||    
T  51545286 ttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttct 51545240  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 24398591 - 24398631
Alignment:
Q  243 tgtgtcattgtgaacttttgtatgtcagaaaa-caattttc 282  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  24398591 tgtgtcattgtgaacttttgtatgttagaaaagcaattttc 24398631  T

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