View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_10 (Length: 517)
Name: NF15081_low_10
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 96 - 507
Target Start/End: Complemental strand, 32128222 - 32127811
Alignment:
| Q |
96 |
ttcataaaattccttcaaaacttgagatcaggaagatcccttcagtacatcctcaggtgacagtagaggttgatccaactgataaatattaagtgcagga |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32128222 |
ttcataaaattccttcaaaacttgagatcaggaagatcccttcagtacatcctcaggtgacagtagaggttgatccagctgataaatattaagtgcagga |
32128123 |
T |
|
| Q |
196 |
cccacaaacctaaacgctatccacagcccaatcattatgaagattgatgcatatgcaaatttgttaagccaaaagagagcacctttctctcctacataaa |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32128122 |
cccacaaacctaaacgctatccacagcccaatcattatgaagattgaagcatatgcaaatttgttaagccaaaagagagcacctttctctcctacataaa |
32128023 |
T |
|
| Q |
296 |
gctcaagtgccttctcagtgaaactcatgtcctcccatttcttaggagcagcctttgccttgggttgctgtatgctatttgtgagagttccattctctct |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32128022 |
gctcaagtgccttctcagtgaaactcatgtcctcccatttcttaggagcagcctttgccttgggttgctgtatgctatttgtgagagttccattctctct |
32127923 |
T |
|
| Q |
396 |
ctgttttctagcttgtcttttcgatcttcggcgcagccttagttcaaccggttcagctggtgttggagttggtgcttgaactgaatctttttcatcgtcg |
495 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32127922 |
ctgttttctagcttgtcttttcgatcttcgccgcagccttagttcaaccggttcagctggtgttggagttggtgcttgaactgaatctttttcatcgtcg |
32127823 |
T |
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| Q |
496 |
tccgtgtctgtg |
507 |
Q |
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||||||| |||| |
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| T |
32127822 |
tccgtgtttgtg |
32127811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 32128275 - 32128226
Alignment:
| Q |
18 |
aaaagacagaccaaattctgaagcttaacaacataattcaggagcacctg |
67 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32128275 |
aaaagacagaccaaattctgaaccttaacaacataattcaggagcacctg |
32128226 |
T |
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